Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1572

Experiment: MoYLS4 with Spectinomycin 0.025 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrho and DVU1572 are separated by 326 nucleotidesDVU1572 and pth are separated by 114 nucleotidespth and rplY are separated by 114 nucleotides DVU1571: rho - transcription termination factor Rho (TIGR), at 1,653,748 to 1,654,998 rho DVU1572: DVU1572 - transcriptional regulator, CarD family (TIGR), at 1,655,325 to 1,655,840 DVU1572 DVU1573: pth - peptidyl-tRNA hydrolase (TIGR), at 1,655,955 to 1,656,560 pth DVU1574: rplY - ribosomal protein L25 (TIGR), at 1,656,675 to 1,657,247 rplY Position (kb) 1655 1656Strain fitness (log2 ratio) -3 -2 -1 0 1at 1654.334 kb on - strand, within rhoat 1655.297 kb on + strandat 1655.513 kb on + strand, within DVU1572at 1655.578 kb on + strand, within DVU1572at 1655.817 kb on - strandat 1655.821 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Spectinomycin 0.025 mg/mL
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1,654,334 - rho DVU1571 0.47 -2.0
1,655,297 + +0.1
1,655,513 + DVU1572 0.36 -3.4
1,655,578 + DVU1572 0.49 -2.2
1,655,817 - -1.8
1,655,821 + -1.6

Or see this region's nucleotide sequence