Experiment: MoYLS4 with Spectinomycin 0.025 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0230 and DVU0231 are separated by 80 nucleotides DVU0231 and DVU0232 overlap by 8 nucleotides DVU0232 and DORF26446 are separated by 142 nucleotides DORF26446 and DVU0234 are separated by 787 nucleotides
DVU0230: DVU0230 - transcriptional regulator cII, putative (TIGR), at 265,802 to 266,266
DVU0230
DVU0231: DVU0231 - hypothetical protein (TIGR), at 266,347 to 266,571
DVU0231
DVU0232: DVU0232 - hypothetical protein (TIGR), at 266,564 to 266,812
DVU0232
DORF26446: DORF26446 - no description, at 266,955 to 267,194
DORF26446
DVU0234: DVU0234 - hypothetical protein (TIGR), at 267,982 to 268,305
DVU0234
Position (kb) 266
267
268 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 266.024 kb on + strand, within DVU0230 at 266.032 kb on - strand, within DVU0230 at 266.032 kb on - strand, within DVU0230 at 266.032 kb on - strand, within DVU0230 at 266.038 kb on - strand, within DVU0230 at 266.042 kb on - strand, within DVU0230 at 266.190 kb on - strand, within DVU0230 at 266.197 kb on + strand, within DVU0230 at 266.205 kb on - strand, within DVU0230 at 266.233 kb on - strand at 266.287 kb on + strand at 266.360 kb on + strand at 266.368 kb on - strand at 266.381 kb on + strand, within DVU0231 at 266.473 kb on + strand, within DVU0231 at 266.473 kb on + strand, within DVU0231 at 266.501 kb on + strand, within DVU0231 at 266.509 kb on - strand, within DVU0231 at 266.509 kb on - strand, within DVU0231 at 266.525 kb on + strand, within DVU0231 at 266.538 kb on - strand, within DVU0231 at 266.617 kb on + strand, within DVU0232 at 266.633 kb on - strand, within DVU0232 at 266.807 kb on + strand at 266.807 kb on + strand at 266.920 kb on - strand at 266.922 kb on + strand at 266.922 kb on + strand at 266.922 kb on + strand at 266.922 kb on + strand at 266.930 kb on - strand at 266.930 kb on - strand at 266.930 kb on - strand at 266.930 kb on - strand at 266.930 kb on - strand at 266.935 kb on - strand at 266.942 kb on - strand at 267.059 kb on + strand, within DORF26446 at 267.211 kb on + strand at 267.221 kb on + strand at 267.221 kb on + strand at 267.221 kb on + strand at 267.221 kb on + strand at 267.221 kb on + strand at 267.229 kb on - strand at 267.229 kb on - strand at 267.229 kb on - strand at 267.281 kb on + strand at 267.489 kb on + strand at 267.491 kb on + strand at 267.508 kb on - strand at 267.615 kb on + strand at 267.674 kb on - strand at 267.681 kb on + strand at 267.728 kb on - strand at 267.743 kb on - strand at 267.769 kb on - strand at 267.779 kb on - strand at 267.812 kb on - strand at 267.839 kb on - strand at 267.902 kb on - strand at 267.935 kb on + strand at 267.981 kb on - strand at 268.025 kb on - strand, within DVU0234 at 268.025 kb on - strand, within DVU0234 at 268.027 kb on + strand, within DVU0234 at 268.051 kb on + strand, within DVU0234 at 268.059 kb on - strand, within DVU0234 at 268.059 kb on - strand, within DVU0234 at 268.083 kb on + strand, within DVU0234 at 268.178 kb on - strand, within DVU0234
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Spectinomycin 0.025 mg/mL remove 266,024 + DVU0230 0.48 -0.5 266,032 - DVU0230 0.49 +0.8 266,032 - DVU0230 0.49 -0.9 266,032 - DVU0230 0.49 -0.1 266,038 - DVU0230 0.51 -1.1 266,042 - DVU0230 0.52 +0.7 266,190 - DVU0230 0.83 -0.4 266,197 + DVU0230 0.85 -1.5 266,205 - DVU0230 0.87 -2.8 266,233 - -0.9 266,287 + +0.6 266,360 + +0.9 266,368 - -0.5 266,381 + DVU0231 0.15 -0.2 266,473 + DVU0231 0.56 -1.0 266,473 + DVU0231 0.56 -0.3 266,501 + DVU0231 0.68 -0.5 266,509 - DVU0231 0.72 +0.2 266,509 - DVU0231 0.72 -1.3 266,525 + DVU0231 0.79 -0.3 266,538 - DVU0231 0.85 +0.6 266,617 + DVU0232 0.21 -0.5 266,633 - DVU0232 0.28 -0.1 266,807 + -0.2 266,807 + -1.1 266,920 - -3.2 266,922 + -0.2 266,922 + +0.2 266,922 + +0.9 266,922 + +0.4 266,930 - -0.3 266,930 - -0.1 266,930 - -0.6 266,930 - -1.1 266,930 - -0.3 266,935 - +0.1 266,942 - +0.1 267,059 + DORF26446 0.43 -0.6 267,211 + -0.8 267,221 + -0.5 267,221 + -0.0 267,221 + -1.6 267,221 + -0.0 267,221 + -0.1 267,229 - -1.0 267,229 - +0.6 267,229 - -1.3 267,281 + +0.2 267,489 + -0.2 267,491 + +0.8 267,508 - -0.2 267,615 + -1.0 267,674 - +0.3 267,681 + +0.3 267,728 - -1.4 267,743 - -0.3 267,769 - -0.1 267,779 - -0.5 267,812 - +1.0 267,839 - +0.3 267,902 - -0.1 267,935 + +0.4 267,981 - +0.1 268,025 - DVU0234 0.13 +0.1 268,025 - DVU0234 0.13 +0.4 268,027 + DVU0234 0.14 +0.1 268,051 + DVU0234 0.21 -1.6 268,059 - DVU0234 0.24 +0.2 268,059 - DVU0234 0.24 -0.1 268,083 + DVU0234 0.31 +1.2 268,178 - DVU0234 0.60 -0.9
Or see this region's nucleotide sequence