Experiment: MoYLS4 with Chlorate 6.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rluC and DVU3192 overlap by 4 nucleotides DVU3192 and DVU3193 are separated by 249 nucleotides
DVU3191: rluC - ribosomal large subunit pseudouridine synthase C (TIGR), at 3,351,436 to 3,352,608
rluC
DVU3192: DVU3192 - glycosyl transferase, group 1 family protein (TIGR), at 3,352,605 to 3,353,765
DVU3192
DVU3193: DVU3193 - DNA-binding domain, excisionase family (TIGR), at 3,354,015 to 3,354,926
DVU3193
Position (kb)
3352
3353
3354 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3351.782 kb on + strand, within rluC at 3351.911 kb on + strand, within rluC at 3351.917 kb on + strand, within rluC at 3351.960 kb on - strand, within rluC at 3352.140 kb on + strand, within rluC at 3352.140 kb on + strand, within rluC at 3352.281 kb on + strand, within rluC at 3352.454 kb on + strand, within rluC at 3352.502 kb on + strand at 3352.530 kb on + strand at 3353.757 kb on + strand at 3353.776 kb on + strand at 3353.811 kb on + strand at 3353.824 kb on - strand at 3353.827 kb on + strand at 3353.887 kb on - strand at 3353.935 kb on + strand at 3353.944 kb on - strand at 3353.958 kb on - strand at 3353.965 kb on - strand at 3354.057 kb on - strand at 3354.057 kb on - strand at 3354.067 kb on - strand at 3354.067 kb on - strand at 3354.082 kb on - strand at 3354.191 kb on - strand, within DVU3193 at 3354.240 kb on - strand, within DVU3193 at 3354.336 kb on - strand, within DVU3193 at 3354.355 kb on + strand, within DVU3193 at 3354.376 kb on - strand, within DVU3193 at 3354.524 kb on - strand, within DVU3193 at 3354.679 kb on + strand, within DVU3193 at 3354.684 kb on + strand, within DVU3193 at 3354.684 kb on + strand, within DVU3193 at 3354.687 kb on - strand, within DVU3193 at 3354.757 kb on - strand, within DVU3193 at 3354.757 kb on - strand, within DVU3193 at 3354.759 kb on + strand, within DVU3193
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Chlorate 6.25 mM remove 3,351,782 + rluC DVU3191 0.29 +0.2 3,351,911 + rluC DVU3191 0.40 -0.1 3,351,917 + rluC DVU3191 0.41 -0.0 3,351,960 - rluC DVU3191 0.45 +0.5 3,352,140 + rluC DVU3191 0.60 -0.4 3,352,140 + rluC DVU3191 0.60 -0.1 3,352,281 + rluC DVU3191 0.72 -0.4 3,352,454 + rluC DVU3191 0.87 -0.4 3,352,502 + -0.8 3,352,530 + +0.1 3,353,757 + -0.6 3,353,776 + -0.5 3,353,811 + -0.1 3,353,824 - +0.7 3,353,827 + -0.3 3,353,887 - +0.2 3,353,935 + +1.8 3,353,944 - +0.1 3,353,958 - +1.0 3,353,965 - +0.4 3,354,057 - +0.7 3,354,057 - +1.5 3,354,067 - +0.8 3,354,067 - +0.3 3,354,082 - +2.0 3,354,191 - DVU3193 0.19 +1.0 3,354,240 - DVU3193 0.25 +2.0 3,354,336 - DVU3193 0.35 +2.3 3,354,355 + DVU3193 0.37 +1.0 3,354,376 - DVU3193 0.40 +1.3 3,354,524 - DVU3193 0.56 +1.0 3,354,679 + DVU3193 0.73 +2.0 3,354,684 + DVU3193 0.73 +2.8 3,354,684 + DVU3193 0.73 +2.7 3,354,687 - DVU3193 0.74 +1.9 3,354,757 - DVU3193 0.81 +0.0 3,354,757 - DVU3193 0.81 +3.4 3,354,759 + DVU3193 0.82 +2.1
Or see this region's nucleotide sequence