Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3192

Experiment: MoYLS4 with Chlorate 6.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntrluC and DVU3192 overlap by 4 nucleotidesDVU3192 and DVU3193 are separated by 249 nucleotides DVU3191: rluC - ribosomal large subunit pseudouridine synthase C (TIGR), at 3,351,436 to 3,352,608 rluC DVU3192: DVU3192 - glycosyl transferase, group 1 family protein (TIGR), at 3,352,605 to 3,353,765 DVU3192 DVU3193: DVU3193 - DNA-binding domain, excisionase family (TIGR), at 3,354,015 to 3,354,926 DVU3193 Position (kb) 3352 3353 3354Strain fitness (log2 ratio) -1 0 1 2 3at 3351.782 kb on + strand, within rluCat 3351.911 kb on + strand, within rluCat 3351.917 kb on + strand, within rluCat 3351.960 kb on - strand, within rluCat 3352.140 kb on + strand, within rluCat 3352.140 kb on + strand, within rluCat 3352.281 kb on + strand, within rluCat 3352.454 kb on + strand, within rluCat 3352.502 kb on + strandat 3352.530 kb on + strandat 3353.757 kb on + strandat 3353.776 kb on + strandat 3353.811 kb on + strandat 3353.824 kb on - strandat 3353.827 kb on + strandat 3353.887 kb on - strandat 3353.935 kb on + strandat 3353.944 kb on - strandat 3353.958 kb on - strandat 3353.965 kb on - strandat 3354.057 kb on - strandat 3354.057 kb on - strandat 3354.067 kb on - strandat 3354.067 kb on - strandat 3354.082 kb on - strandat 3354.191 kb on - strand, within DVU3193at 3354.240 kb on - strand, within DVU3193at 3354.336 kb on - strand, within DVU3193at 3354.355 kb on + strand, within DVU3193at 3354.376 kb on - strand, within DVU3193at 3354.524 kb on - strand, within DVU3193at 3354.679 kb on + strand, within DVU3193at 3354.684 kb on + strand, within DVU3193at 3354.684 kb on + strand, within DVU3193at 3354.687 kb on - strand, within DVU3193at 3354.757 kb on - strand, within DVU3193at 3354.757 kb on - strand, within DVU3193at 3354.759 kb on + strand, within DVU3193

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Chlorate 6.25 mM
remove
3,351,782 + rluC DVU3191 0.29 +0.2
3,351,911 + rluC DVU3191 0.40 -0.1
3,351,917 + rluC DVU3191 0.41 -0.0
3,351,960 - rluC DVU3191 0.45 +0.5
3,352,140 + rluC DVU3191 0.60 -0.4
3,352,140 + rluC DVU3191 0.60 -0.1
3,352,281 + rluC DVU3191 0.72 -0.4
3,352,454 + rluC DVU3191 0.87 -0.4
3,352,502 + -0.8
3,352,530 + +0.1
3,353,757 + -0.6
3,353,776 + -0.5
3,353,811 + -0.1
3,353,824 - +0.7
3,353,827 + -0.3
3,353,887 - +0.2
3,353,935 + +1.8
3,353,944 - +0.1
3,353,958 - +1.0
3,353,965 - +0.4
3,354,057 - +0.7
3,354,057 - +1.5
3,354,067 - +0.8
3,354,067 - +0.3
3,354,082 - +2.0
3,354,191 - DVU3193 0.19 +1.0
3,354,240 - DVU3193 0.25 +2.0
3,354,336 - DVU3193 0.35 +2.3
3,354,355 + DVU3193 0.37 +1.0
3,354,376 - DVU3193 0.40 +1.3
3,354,524 - DVU3193 0.56 +1.0
3,354,679 + DVU3193 0.73 +2.0
3,354,684 + DVU3193 0.73 +2.8
3,354,684 + DVU3193 0.73 +2.7
3,354,687 - DVU3193 0.74 +1.9
3,354,757 - DVU3193 0.81 +0.0
3,354,757 - DVU3193 0.81 +3.4
3,354,759 + DVU3193 0.82 +2.1

Or see this region's nucleotide sequence