Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2484

Experiment: MoYLS4 with Chlorate 6.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2483 and DVU2484 are separated by 26 nucleotidesDVU2484 and DVU2485 are separated by 3 nucleotides DVU2483: DVU2483 - cytochrome c family protein (TIGR), at 2,593,092 to 2,594,837 DVU2483 DVU2484: DVU2484 - cytochrome c family protein (TIGR), at 2,594,864 to 2,596,156 DVU2484 DVU2485: DVU2485 - membrane protein, putative (TIGR), at 2,596,160 to 2,597,224 DVU2485 Position (kb) 2594 2595 2596 2597Strain fitness (log2 ratio) -2 -1 0 1at 2593.867 kb on + strand, within DVU2483at 2593.885 kb on - strand, within DVU2483at 2593.890 kb on - strand, within DVU2483at 2593.902 kb on + strand, within DVU2483at 2593.910 kb on - strand, within DVU2483at 2593.917 kb on - strand, within DVU2483at 2594.025 kb on - strand, within DVU2483at 2594.094 kb on + strand, within DVU2483at 2594.144 kb on - strand, within DVU2483at 2594.226 kb on + strand, within DVU2483at 2594.244 kb on + strand, within DVU2483at 2594.258 kb on - strand, within DVU2483at 2594.302 kb on - strand, within DVU2483at 2594.317 kb on + strand, within DVU2483at 2594.317 kb on + strand, within DVU2483at 2594.325 kb on - strand, within DVU2483at 2594.420 kb on + strand, within DVU2483at 2594.436 kb on - strand, within DVU2483at 2594.436 kb on - strand, within DVU2483at 2594.585 kb on - strand, within DVU2483at 2594.617 kb on - strand, within DVU2483at 2594.617 kb on - strand, within DVU2483at 2594.689 kb on + strandat 2594.821 kb on - strandat 2594.946 kb on + strandat 2594.954 kb on - strandat 2594.961 kb on + strandat 2594.964 kb on - strandat 2595.025 kb on - strand, within DVU2484at 2595.124 kb on + strand, within DVU2484at 2595.127 kb on - strand, within DVU2484at 2595.321 kb on - strand, within DVU2484at 2595.326 kb on - strand, within DVU2484at 2595.350 kb on + strand, within DVU2484at 2595.352 kb on + strand, within DVU2484at 2595.455 kb on + strand, within DVU2484at 2595.575 kb on - strand, within DVU2484at 2595.587 kb on - strand, within DVU2484at 2595.601 kb on - strand, within DVU2484at 2595.711 kb on + strand, within DVU2484at 2595.951 kb on + strand, within DVU2484at 2595.982 kb on + strand, within DVU2484at 2596.080 kb on - strandat 2596.127 kb on - strandat 2596.176 kb on - strandat 2596.197 kb on + strandat 2596.249 kb on + strandat 2596.268 kb on + strand, within DVU2485at 2596.268 kb on + strand, within DVU2485at 2596.283 kb on - strand, within DVU2485at 2596.288 kb on - strand, within DVU2485at 2596.302 kb on - strand, within DVU2485at 2596.333 kb on + strand, within DVU2485at 2596.413 kb on + strand, within DVU2485at 2596.462 kb on - strand, within DVU2485at 2596.495 kb on - strand, within DVU2485at 2596.511 kb on + strand, within DVU2485at 2596.519 kb on - strand, within DVU2485at 2596.534 kb on + strand, within DVU2485at 2596.550 kb on + strand, within DVU2485at 2596.588 kb on + strand, within DVU2485at 2596.601 kb on - strand, within DVU2485at 2596.660 kb on + strand, within DVU2485at 2596.660 kb on + strand, within DVU2485at 2596.664 kb on - strand, within DVU2485at 2596.681 kb on + strand, within DVU2485at 2596.697 kb on + strand, within DVU2485at 2596.733 kb on - strand, within DVU2485at 2596.873 kb on - strand, within DVU2485at 2596.891 kb on + strand, within DVU2485at 2596.896 kb on + strand, within DVU2485at 2596.916 kb on + strand, within DVU2485at 2597.021 kb on + strand, within DVU2485at 2597.067 kb on + strand, within DVU2485at 2597.067 kb on + strand, within DVU2485at 2597.113 kb on - strand, within DVU2485at 2597.137 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Chlorate 6.25 mM
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2,593,867 + DVU2483 0.44 -0.0
2,593,885 - DVU2483 0.45 -1.5
2,593,890 - DVU2483 0.46 +0.1
2,593,902 + DVU2483 0.46 -0.7
2,593,910 - DVU2483 0.47 +0.4
2,593,917 - DVU2483 0.47 +0.0
2,594,025 - DVU2483 0.53 +0.4
2,594,094 + DVU2483 0.57 +0.1
2,594,144 - DVU2483 0.60 +0.1
2,594,226 + DVU2483 0.65 +0.5
2,594,244 + DVU2483 0.66 -0.1
2,594,258 - DVU2483 0.67 -0.0
2,594,302 - DVU2483 0.69 +0.0
2,594,317 + DVU2483 0.70 -0.5
2,594,317 + DVU2483 0.70 -0.7
2,594,325 - DVU2483 0.71 -0.1
2,594,420 + DVU2483 0.76 -1.4
2,594,436 - DVU2483 0.77 +0.3
2,594,436 - DVU2483 0.77 -0.1
2,594,585 - DVU2483 0.86 +0.4
2,594,617 - DVU2483 0.87 +0.6
2,594,617 - DVU2483 0.87 +0.1
2,594,689 + +0.6
2,594,821 - -0.6
2,594,946 + +0.3
2,594,954 - -0.4
2,594,961 + -0.9
2,594,964 - -0.1
2,595,025 - DVU2484 0.12 -0.5
2,595,124 + DVU2484 0.20 -0.2
2,595,127 - DVU2484 0.20 -1.0
2,595,321 - DVU2484 0.35 -0.3
2,595,326 - DVU2484 0.36 -1.2
2,595,350 + DVU2484 0.38 +0.8
2,595,352 + DVU2484 0.38 +0.1
2,595,455 + DVU2484 0.46 -0.6
2,595,575 - DVU2484 0.55 -0.5
2,595,587 - DVU2484 0.56 -0.9
2,595,601 - DVU2484 0.57 +1.1
2,595,711 + DVU2484 0.66 -0.8
2,595,951 + DVU2484 0.84 -1.0
2,595,982 + DVU2484 0.86 -2.2
2,596,080 - -0.1
2,596,127 - +0.1
2,596,176 - -0.5
2,596,197 + +0.1
2,596,249 + -0.9
2,596,268 + DVU2485 0.10 -0.3
2,596,268 + DVU2485 0.10 -1.5
2,596,283 - DVU2485 0.12 -0.1
2,596,288 - DVU2485 0.12 +0.0
2,596,302 - DVU2485 0.13 -1.3
2,596,333 + DVU2485 0.16 +0.1
2,596,413 + DVU2485 0.24 -0.6
2,596,462 - DVU2485 0.28 +0.4
2,596,495 - DVU2485 0.31 -0.9
2,596,511 + DVU2485 0.33 -1.1
2,596,519 - DVU2485 0.34 -1.1
2,596,534 + DVU2485 0.35 -1.5
2,596,550 + DVU2485 0.37 +1.0
2,596,588 + DVU2485 0.40 -0.0
2,596,601 - DVU2485 0.41 -0.2
2,596,660 + DVU2485 0.47 -0.3
2,596,660 + DVU2485 0.47 -0.9
2,596,664 - DVU2485 0.47 -0.3
2,596,681 + DVU2485 0.49 -1.9
2,596,697 + DVU2485 0.50 +0.1
2,596,733 - DVU2485 0.54 -0.4
2,596,873 - DVU2485 0.67 -1.3
2,596,891 + DVU2485 0.69 -0.6
2,596,896 + DVU2485 0.69 -0.8
2,596,916 + DVU2485 0.71 -1.1
2,597,021 + DVU2485 0.81 -1.8
2,597,067 + DVU2485 0.85 -2.4
2,597,067 + DVU2485 0.85 -0.2
2,597,113 - DVU2485 0.89 -0.4
2,597,137 + -2.4

Or see this region's nucleotide sequence