Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0049

Experiment: MoYLS4 with Chlorate 6.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVUA0048 and DVUA0049 are separated by 3 nucleotidesDVUA0049 and DVUA0050 are separated by 15 nucleotides DVUA0048: DVUA0048 - exopolysaccharide production protein, putative (TIGR), at 58,360 to 59,757 DVUA0048 DVUA0049: DVUA0049 - polysaccharide biosynthesis family protein (TIGR), at 59,761 to 61,230 DVUA0049 DVUA0050: DVUA0050 - conserved hypothetical protein (TIGR), at 61,246 to 62,502 DVUA0050 Position (kb) 59 60 61 62Strain fitness (log2 ratio) -2 -1 0 1at 58.793 kb on + strand, within DVUA0048at 58.827 kb on + strand, within DVUA0048at 58.918 kb on - strand, within DVUA0048at 58.933 kb on + strand, within DVUA0048at 58.941 kb on - strand, within DVUA0048at 58.941 kb on - strand, within DVUA0048at 58.954 kb on + strand, within DVUA0048at 59.033 kb on - strand, within DVUA0048at 59.034 kb on - strand, within DVUA0048at 59.059 kb on + strand, within DVUA0048at 59.091 kb on + strand, within DVUA0048at 59.135 kb on - strand, within DVUA0048at 59.219 kb on - strand, within DVUA0048at 59.233 kb on + strand, within DVUA0048at 59.235 kb on + strand, within DVUA0048at 59.289 kb on + strand, within DVUA0048at 59.392 kb on + strand, within DVUA0048at 59.405 kb on - strand, within DVUA0048at 59.425 kb on + strand, within DVUA0048at 59.461 kb on - strand, within DVUA0048at 59.567 kb on + strand, within DVUA0048at 59.751 kb on - strandat 59.761 kb on - strandat 59.838 kb on + strandat 59.868 kb on + strandat 59.876 kb on - strandat 59.896 kb on - strandat 59.901 kb on - strandat 59.976 kb on - strand, within DVUA0049at 60.007 kb on - strand, within DVUA0049at 60.017 kb on - strand, within DVUA0049at 60.058 kb on - strand, within DVUA0049at 60.058 kb on - strand, within DVUA0049at 60.058 kb on - strand, within DVUA0049at 60.060 kb on + strand, within DVUA0049at 60.060 kb on + strand, within DVUA0049at 60.082 kb on - strand, within DVUA0049at 60.206 kb on - strand, within DVUA0049at 60.232 kb on + strand, within DVUA0049at 60.253 kb on + strand, within DVUA0049at 60.372 kb on + strand, within DVUA0049at 60.375 kb on - strand, within DVUA0049at 60.405 kb on + strand, within DVUA0049at 60.495 kb on + strand, within DVUA0049at 60.513 kb on + strand, within DVUA0049at 60.513 kb on + strand, within DVUA0049at 60.513 kb on + strand, within DVUA0049at 60.513 kb on + strand, within DVUA0049at 60.513 kb on + strand, within DVUA0049at 60.513 kb on + strand, within DVUA0049at 60.535 kb on + strand, within DVUA0049at 60.558 kb on + strand, within DVUA0049at 60.738 kb on + strand, within DVUA0049at 60.745 kb on - strand, within DVUA0049at 60.801 kb on + strand, within DVUA0049at 60.913 kb on - strand, within DVUA0049at 61.003 kb on + strand, within DVUA0049at 61.011 kb on - strand, within DVUA0049at 61.034 kb on - strand, within DVUA0049at 61.096 kb on - strandat 61.145 kb on - strandat 61.225 kb on + strandat 61.373 kb on + strand, within DVUA0050at 61.411 kb on - strand, within DVUA0050at 61.431 kb on + strand, within DVUA0050at 61.450 kb on + strand, within DVUA0050at 61.458 kb on - strand, within DVUA0050at 61.480 kb on + strand, within DVUA0050at 61.543 kb on + strand, within DVUA0050at 61.551 kb on - strand, within DVUA0050at 61.551 kb on - strand, within DVUA0050at 61.551 kb on - strand, within DVUA0050at 61.672 kb on - strand, within DVUA0050at 61.672 kb on - strand, within DVUA0050at 61.693 kb on + strand, within DVUA0050at 61.693 kb on + strand, within DVUA0050at 61.693 kb on + strand, within DVUA0050at 61.693 kb on + strand, within DVUA0050at 61.695 kb on + strand, within DVUA0050at 61.701 kb on - strand, within DVUA0050at 61.708 kb on + strand, within DVUA0050at 61.712 kb on + strand, within DVUA0050at 61.738 kb on - strand, within DVUA0050at 61.748 kb on - strand, within DVUA0050at 61.844 kb on - strand, within DVUA0050at 61.867 kb on - strand, within DVUA0050at 61.873 kb on - strand, within DVUA0050at 61.919 kb on - strand, within DVUA0050at 61.922 kb on + strand, within DVUA0050at 61.940 kb on - strand, within DVUA0050at 61.940 kb on - strand, within DVUA0050at 61.950 kb on - strand, within DVUA0050at 61.993 kb on - strand, within DVUA0050at 62.061 kb on - strand, within DVUA0050at 62.126 kb on + strand, within DVUA0050at 62.175 kb on + strand, within DVUA0050at 62.175 kb on + strand, within DVUA0050at 62.206 kb on - strand, within DVUA0050at 62.206 kb on - strand, within DVUA0050at 62.225 kb on + strand, within DVUA0050

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Chlorate 6.25 mM
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58,793 + DVUA0048 0.31 -2.2
58,827 + DVUA0048 0.33 +0.2
58,918 - DVUA0048 0.40 -0.4
58,933 + DVUA0048 0.41 +0.1
58,941 - DVUA0048 0.42 +0.2
58,941 - DVUA0048 0.42 +0.5
58,954 + DVUA0048 0.42 +0.1
59,033 - DVUA0048 0.48 -1.5
59,034 - DVUA0048 0.48 +0.1
59,059 + DVUA0048 0.50 -0.0
59,091 + DVUA0048 0.52 +0.1
59,135 - DVUA0048 0.55 -1.0
59,219 - DVUA0048 0.61 -0.1
59,233 + DVUA0048 0.62 -0.6
59,235 + DVUA0048 0.63 -0.0
59,289 + DVUA0048 0.66 -1.1
59,392 + DVUA0048 0.74 +0.8
59,405 - DVUA0048 0.75 -0.4
59,425 + DVUA0048 0.76 -0.1
59,461 - DVUA0048 0.79 -0.4
59,567 + DVUA0048 0.86 +0.3
59,751 - -0.3
59,761 - -0.2
59,838 + -0.3
59,868 + -1.0
59,876 - +0.3
59,896 - -0.1
59,901 - -0.5
59,976 - DVUA0049 0.15 +0.1
60,007 - DVUA0049 0.17 -0.0
60,017 - DVUA0049 0.17 +1.3
60,058 - DVUA0049 0.20 -1.2
60,058 - DVUA0049 0.20 +0.5
60,058 - DVUA0049 0.20 +0.7
60,060 + DVUA0049 0.20 -0.8
60,060 + DVUA0049 0.20 -0.8
60,082 - DVUA0049 0.22 +0.4
60,206 - DVUA0049 0.30 -0.5
60,232 + DVUA0049 0.32 +0.1
60,253 + DVUA0049 0.33 +0.4
60,372 + DVUA0049 0.42 +0.2
60,375 - DVUA0049 0.42 -0.1
60,405 + DVUA0049 0.44 -0.3
60,495 + DVUA0049 0.50 +0.3
60,513 + DVUA0049 0.51 +0.3
60,513 + DVUA0049 0.51 +0.2
60,513 + DVUA0049 0.51 +0.8
60,513 + DVUA0049 0.51 +0.4
60,513 + DVUA0049 0.51 +0.3
60,513 + DVUA0049 0.51 -0.0
60,535 + DVUA0049 0.53 +0.1
60,558 + DVUA0049 0.54 -0.0
60,738 + DVUA0049 0.66 +0.1
60,745 - DVUA0049 0.67 +0.5
60,801 + DVUA0049 0.71 +0.3
60,913 - DVUA0049 0.78 -1.2
61,003 + DVUA0049 0.84 +0.2
61,011 - DVUA0049 0.85 -1.9
61,034 - DVUA0049 0.87 -0.2
61,096 - +0.2
61,145 - +0.2
61,225 + -0.5
61,373 + DVUA0050 0.10 +0.1
61,411 - DVUA0050 0.13 -0.1
61,431 + DVUA0050 0.15 +0.5
61,450 + DVUA0050 0.16 +0.1
61,458 - DVUA0050 0.17 +0.4
61,480 + DVUA0050 0.19 -1.1
61,543 + DVUA0050 0.24 +0.0
61,551 - DVUA0050 0.24 -1.1
61,551 - DVUA0050 0.24 -0.5
61,551 - DVUA0050 0.24 +0.2
61,672 - DVUA0050 0.34 +0.4
61,672 - DVUA0050 0.34 +0.1
61,693 + DVUA0050 0.36 -1.3
61,693 + DVUA0050 0.36 +0.1
61,693 + DVUA0050 0.36 -0.2
61,693 + DVUA0050 0.36 -0.6
61,695 + DVUA0050 0.36 +0.0
61,701 - DVUA0050 0.36 -0.1
61,708 + DVUA0050 0.37 -0.3
61,712 + DVUA0050 0.37 +0.2
61,738 - DVUA0050 0.39 -0.1
61,748 - DVUA0050 0.40 -0.1
61,844 - DVUA0050 0.48 -0.8
61,867 - DVUA0050 0.49 +0.4
61,873 - DVUA0050 0.50 +0.3
61,919 - DVUA0050 0.54 -1.5
61,922 + DVUA0050 0.54 +0.6
61,940 - DVUA0050 0.55 -0.2
61,940 - DVUA0050 0.55 +0.4
61,950 - DVUA0050 0.56 +0.1
61,993 - DVUA0050 0.59 +0.1
62,061 - DVUA0050 0.65 +0.4
62,126 + DVUA0050 0.70 +0.0
62,175 + DVUA0050 0.74 +0.0
62,175 + DVUA0050 0.74 -0.1
62,206 - DVUA0050 0.76 +0.5
62,206 - DVUA0050 0.76 +0.2
62,225 + DVUA0050 0.78 +0.4

Or see this region's nucleotide sequence