Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1214

Experiment: MoYLS4 with Chlorate 6.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1213 and DVU1214 are separated by 385 nucleotidesDVU1214 and DVU1215 are separated by 14 nucleotides DVU1213: DVU1213 - rhomboid family protein (TIGR), at 1,302,307 to 1,303,320 DVU1213 DVU1214: DVU1214 - dolichyl-phosphate-mannose-protein mannosyltransferase family protein (TIGR), at 1,303,706 to 1,305,880 DVU1214 DVU1215: DVU1215 - PAP2 family protein (TIGR), at 1,305,895 to 1,306,509 DVU1215 Position (kb) 1303 1304 1305 1306Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1302.782 kb on - strand, within DVU1213at 1302.796 kb on + strand, within DVU1213at 1302.963 kb on - strand, within DVU1213at 1303.009 kb on + strand, within DVU1213at 1303.014 kb on + strand, within DVU1213at 1303.014 kb on - strand, within DVU1213at 1303.116 kb on + strand, within DVU1213at 1303.116 kb on + strand, within DVU1213at 1303.116 kb on + strand, within DVU1213at 1303.186 kb on + strand, within DVU1213at 1303.252 kb on + strandat 1303.268 kb on + strandat 1303.365 kb on - strandat 1303.395 kb on + strandat 1303.403 kb on - strandat 1303.452 kb on - strandat 1303.497 kb on + strandat 1303.503 kb on - strandat 1303.620 kb on + strandat 1303.803 kb on - strandat 1303.829 kb on - strandat 1303.840 kb on - strandat 1303.951 kb on + strand, within DVU1214at 1303.985 kb on + strand, within DVU1214at 1304.163 kb on + strand, within DVU1214at 1304.220 kb on - strand, within DVU1214at 1304.439 kb on - strand, within DVU1214at 1304.481 kb on + strand, within DVU1214at 1304.580 kb on - strand, within DVU1214at 1304.630 kb on + strand, within DVU1214at 1304.739 kb on + strand, within DVU1214at 1304.757 kb on + strand, within DVU1214at 1304.767 kb on + strand, within DVU1214at 1304.827 kb on + strand, within DVU1214at 1304.830 kb on - strand, within DVU1214at 1305.109 kb on - strand, within DVU1214at 1305.123 kb on + strand, within DVU1214at 1305.166 kb on - strand, within DVU1214at 1305.258 kb on - strand, within DVU1214at 1305.280 kb on + strand, within DVU1214at 1305.357 kb on + strand, within DVU1214at 1305.359 kb on - strand, within DVU1214at 1305.478 kb on - strand, within DVU1214at 1305.961 kb on + strand, within DVU1215at 1306.048 kb on + strand, within DVU1215at 1306.056 kb on - strand, within DVU1215at 1306.056 kb on - strand, within DVU1215at 1306.083 kb on - strand, within DVU1215at 1306.088 kb on + strand, within DVU1215at 1306.102 kb on + strand, within DVU1215at 1306.439 kb on - strand, within DVU1215at 1306.567 kb on + strandat 1306.676 kb on + strandat 1306.711 kb on + strandat 1306.779 kb on - strandat 1306.803 kb on + strandat 1306.813 kb on + strandat 1306.813 kb on + strandat 1306.813 kb on + strandat 1306.816 kb on - strandat 1306.816 kb on - strandat 1306.816 kb on - strandat 1306.816 kb on - strandat 1306.821 kb on - strandat 1306.821 kb on - strandat 1306.821 kb on - strandat 1306.821 kb on - strandat 1306.821 kb on - strandat 1306.861 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Chlorate 6.25 mM
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1,302,782 - DVU1213 0.47 +0.2
1,302,796 + DVU1213 0.48 +0.2
1,302,963 - DVU1213 0.65 +0.4
1,303,009 + DVU1213 0.69 -2.2
1,303,014 + DVU1213 0.70 -0.0
1,303,014 - DVU1213 0.70 -0.4
1,303,116 + DVU1213 0.80 -0.2
1,303,116 + DVU1213 0.80 +0.3
1,303,116 + DVU1213 0.80 -0.3
1,303,186 + DVU1213 0.87 -0.0
1,303,252 + -0.5
1,303,268 + +0.0
1,303,365 - +0.0
1,303,395 + -0.7
1,303,403 - -0.1
1,303,452 - -0.7
1,303,497 + +0.2
1,303,503 - -0.1
1,303,620 + -0.2
1,303,803 - +0.3
1,303,829 - -0.2
1,303,840 - -0.3
1,303,951 + DVU1214 0.11 +0.1
1,303,985 + DVU1214 0.13 +0.1
1,304,163 + DVU1214 0.21 -1.0
1,304,220 - DVU1214 0.24 -0.5
1,304,439 - DVU1214 0.34 -3.7
1,304,481 + DVU1214 0.36 -3.1
1,304,580 - DVU1214 0.40 -3.2
1,304,630 + DVU1214 0.42 -1.2
1,304,739 + DVU1214 0.47 -3.7
1,304,757 + DVU1214 0.48 -3.1
1,304,767 + DVU1214 0.49 -4.0
1,304,827 + DVU1214 0.52 -2.9
1,304,830 - DVU1214 0.52 -3.0
1,305,109 - DVU1214 0.65 -4.3
1,305,123 + DVU1214 0.65 -3.8
1,305,166 - DVU1214 0.67 -0.5
1,305,258 - DVU1214 0.71 -2.9
1,305,280 + DVU1214 0.72 -0.6
1,305,357 + DVU1214 0.76 -4.4
1,305,359 - DVU1214 0.76 -2.9
1,305,478 - DVU1214 0.81 -3.9
1,305,961 + DVU1215 0.11 -0.0
1,306,048 + DVU1215 0.25 -1.2
1,306,056 - DVU1215 0.26 -1.1
1,306,056 - DVU1215 0.26 -0.7
1,306,083 - DVU1215 0.31 -1.0
1,306,088 + DVU1215 0.31 -1.6
1,306,102 + DVU1215 0.34 -1.0
1,306,439 - DVU1215 0.88 -0.7
1,306,567 + +0.9
1,306,676 + -1.8
1,306,711 + -0.1
1,306,779 - +0.1
1,306,803 + -0.2
1,306,813 + -0.3
1,306,813 + +0.7
1,306,813 + +0.6
1,306,816 - -0.3
1,306,816 - -0.7
1,306,816 - -0.0
1,306,816 - -0.4
1,306,821 - +1.0
1,306,821 - -0.8
1,306,821 - -0.3
1,306,821 - -0.8
1,306,821 - +0.2
1,306,861 + -0.2

Or see this region's nucleotide sequence