Experiment: MoYLS4 with Chlorate 6.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0677 and luxO are separated by 353 nucleotides luxO and DVU0680 overlap by 13 nucleotides
DVU0677: DVU0677 - transglycosylase domain protein (TIGR), at 749,238 to 750,287
DVU0677
DVU0679: luxO - sigma-54 dependent transcriptional regulator/response regulator (TIGR), at 750,641 to 752,107
luxO
DVU0680: DVU0680 - sensory box histidine kinase (TIGR), at 752,095 to 754,167
DVU0680
Position (kb) 750
751
752
753 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 749.749 kb on + strand, within DVU0677 at 749.749 kb on + strand, within DVU0677 at 749.778 kb on - strand, within DVU0677 at 749.812 kb on - strand, within DVU0677 at 749.821 kb on + strand, within DVU0677 at 749.865 kb on - strand, within DVU0677 at 749.909 kb on + strand, within DVU0677 at 750.048 kb on - strand, within DVU0677 at 750.050 kb on - strand, within DVU0677 at 750.111 kb on - strand, within DVU0677 at 750.131 kb on - strand, within DVU0677 at 750.178 kb on - strand, within DVU0677 at 750.251 kb on + strand at 750.259 kb on - strand at 750.272 kb on - strand at 750.308 kb on - strand at 750.317 kb on - strand at 750.397 kb on - strand at 750.423 kb on - strand at 750.435 kb on - strand at 750.453 kb on + strand at 750.733 kb on + strand at 750.775 kb on + strand at 750.912 kb on - strand, within luxO at 750.917 kb on + strand, within luxO at 750.925 kb on - strand, within luxO at 750.925 kb on - strand, within luxO at 750.958 kb on + strand, within luxO at 750.997 kb on - strand, within luxO at 751.143 kb on + strand, within luxO at 751.202 kb on - strand, within luxO at 751.202 kb on - strand, within luxO at 751.230 kb on - strand, within luxO at 751.272 kb on + strand, within luxO at 751.420 kb on - strand, within luxO at 751.442 kb on + strand, within luxO at 751.442 kb on + strand, within luxO at 751.680 kb on + strand, within luxO at 751.745 kb on + strand, within luxO at 751.819 kb on - strand, within luxO at 751.874 kb on - strand, within luxO at 751.884 kb on - strand, within luxO at 751.886 kb on - strand, within luxO at 751.924 kb on + strand, within luxO at 751.987 kb on - strand at 752.022 kb on + strand at 752.035 kb on - strand at 752.055 kb on + strand at 752.084 kb on + strand at 752.117 kb on + strand at 752.187 kb on - strand at 752.293 kb on - strand at 752.302 kb on + strand at 752.302 kb on + strand at 752.302 kb on + strand at 752.302 kb on + strand at 752.310 kb on - strand, within DVU0680 at 752.378 kb on - strand, within DVU0680 at 752.397 kb on - strand, within DVU0680 at 752.461 kb on - strand, within DVU0680 at 752.483 kb on + strand, within DVU0680 at 752.501 kb on + strand, within DVU0680 at 752.511 kb on + strand, within DVU0680 at 752.511 kb on + strand, within DVU0680 at 752.519 kb on - strand, within DVU0680 at 752.555 kb on - strand, within DVU0680 at 752.615 kb on - strand, within DVU0680 at 752.626 kb on + strand, within DVU0680 at 752.629 kb on - strand, within DVU0680 at 752.634 kb on - strand, within DVU0680 at 752.650 kb on + strand, within DVU0680 at 752.655 kb on + strand, within DVU0680 at 752.663 kb on - strand, within DVU0680 at 752.663 kb on - strand, within DVU0680 at 752.663 kb on - strand, within DVU0680 at 752.849 kb on + strand, within DVU0680 at 752.849 kb on + strand, within DVU0680 at 752.857 kb on - strand, within DVU0680 at 752.871 kb on + strand, within DVU0680 at 752.957 kb on + strand, within DVU0680 at 752.965 kb on - strand, within DVU0680 at 752.965 kb on - strand, within DVU0680 at 752.978 kb on + strand, within DVU0680 at 753.033 kb on - strand, within DVU0680 at 753.048 kb on + strand, within DVU0680 at 753.092 kb on - strand, within DVU0680
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Chlorate 6.25 mM remove 749,749 + DVU0677 0.49 +0.2 749,749 + DVU0677 0.49 +0.0 749,778 - DVU0677 0.51 +0.3 749,812 - DVU0677 0.55 -1.0 749,821 + DVU0677 0.56 -0.1 749,865 - DVU0677 0.60 -0.5 749,909 + DVU0677 0.64 +0.0 750,048 - DVU0677 0.77 -1.1 750,050 - DVU0677 0.77 +0.1 750,111 - DVU0677 0.83 -0.2 750,131 - DVU0677 0.85 +0.9 750,178 - DVU0677 0.90 -1.2 750,251 + +0.5 750,259 - -0.2 750,272 - +0.2 750,308 - -0.6 750,317 - +0.3 750,397 - -2.8 750,423 - -0.4 750,435 - -0.1 750,453 + +0.6 750,733 + +0.4 750,775 + +0.3 750,912 - luxO DVU0679 0.18 -0.3 750,917 + luxO DVU0679 0.19 -0.2 750,925 - luxO DVU0679 0.19 +0.2 750,925 - luxO DVU0679 0.19 +0.2 750,958 + luxO DVU0679 0.22 +0.6 750,997 - luxO DVU0679 0.24 -0.3 751,143 + luxO DVU0679 0.34 -1.0 751,202 - luxO DVU0679 0.38 +0.3 751,202 - luxO DVU0679 0.38 +0.3 751,230 - luxO DVU0679 0.40 +0.1 751,272 + luxO DVU0679 0.43 +0.4 751,420 - luxO DVU0679 0.53 +0.8 751,442 + luxO DVU0679 0.55 +0.5 751,442 + luxO DVU0679 0.55 +0.3 751,680 + luxO DVU0679 0.71 +0.0 751,745 + luxO DVU0679 0.75 +0.5 751,819 - luxO DVU0679 0.80 +0.4 751,874 - luxO DVU0679 0.84 -0.5 751,884 - luxO DVU0679 0.85 +0.9 751,886 - luxO DVU0679 0.85 -0.1 751,924 + luxO DVU0679 0.87 +0.4 751,987 - -0.5 752,022 + -0.6 752,035 - +0.5 752,055 + -0.1 752,084 + -0.1 752,117 + -0.7 752,187 - -1.6 752,293 - +1.0 752,302 + -0.3 752,302 + -1.0 752,302 + +0.1 752,302 + +0.2 752,310 - DVU0680 0.10 +0.5 752,378 - DVU0680 0.14 +0.3 752,397 - DVU0680 0.15 -0.3 752,461 - DVU0680 0.18 -0.2 752,483 + DVU0680 0.19 -0.8 752,501 + DVU0680 0.20 +0.4 752,511 + DVU0680 0.20 +2.2 752,511 + DVU0680 0.20 -0.6 752,519 - DVU0680 0.20 -0.5 752,555 - DVU0680 0.22 -0.7 752,615 - DVU0680 0.25 -1.0 752,626 + DVU0680 0.26 +0.5 752,629 - DVU0680 0.26 +0.9 752,634 - DVU0680 0.26 -0.4 752,650 + DVU0680 0.27 -0.2 752,655 + DVU0680 0.27 -0.5 752,663 - DVU0680 0.27 -0.4 752,663 - DVU0680 0.27 +0.7 752,663 - DVU0680 0.27 +2.4 752,849 + DVU0680 0.36 +0.1 752,849 + DVU0680 0.36 -1.8 752,857 - DVU0680 0.37 -0.2 752,871 + DVU0680 0.37 +0.5 752,957 + DVU0680 0.42 +0.3 752,965 - DVU0680 0.42 +0.1 752,965 - DVU0680 0.42 -0.1 752,978 + DVU0680 0.43 +0.2 753,033 - DVU0680 0.45 +0.5 753,048 + DVU0680 0.46 +0.3 753,092 - DVU0680 0.48 -0.0
Or see this region's nucleotide sequence