Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0422

Experiment: MoYLS4 with Chlorate 6.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0421 and DVU0422 are separated by 307 nucleotidesDVU0422 and DVU0423 are separated by 152 nucleotidesDVU0423 and cls are separated by 152 nucleotides DVU0421: DVU0421 - agmatinase, putative (TIGR), at 473,967 to 474,839 DVU0421 DVU0422: DVU0422 - sensory box/GGDEF domain/EAL domain protein (TIGR), at 475,147 to 478,365 DVU0422 DVU0423: DVU0423 - universal stress protein family (TIGR), at 478,518 to 478,943 DVU0423 DVU0424: cls - cardiolipin synthetase (TIGR), at 479,096 to 480,541 cls Position (kb) 475 476 477 478 479Strain fitness (log2 ratio) -2 -1 0 1 2at 474.186 kb on + strand, within DVU0421at 474.213 kb on - strand, within DVU0421at 474.271 kb on - strand, within DVU0421at 474.294 kb on + strand, within DVU0421at 474.385 kb on + strand, within DVU0421at 474.413 kb on - strand, within DVU0421at 474.422 kb on - strand, within DVU0421at 474.489 kb on - strand, within DVU0421at 474.514 kb on + strand, within DVU0421at 474.619 kb on + strand, within DVU0421at 474.627 kb on - strand, within DVU0421at 474.627 kb on - strand, within DVU0421at 474.738 kb on - strand, within DVU0421at 474.797 kb on + strandat 474.806 kb on - strandat 474.819 kb on + strandat 474.826 kb on - strandat 474.878 kb on + strandat 475.077 kb on - strandat 475.093 kb on + strandat 475.095 kb on - strandat 475.258 kb on + strandat 475.261 kb on + strandat 475.271 kb on + strandat 475.271 kb on - strandat 475.271 kb on - strandat 475.312 kb on + strandat 475.425 kb on - strandat 475.444 kb on - strandat 475.459 kb on + strandat 475.542 kb on + strand, within DVU0422at 475.544 kb on + strand, within DVU0422at 475.601 kb on + strand, within DVU0422at 475.732 kb on + strand, within DVU0422at 475.734 kb on - strand, within DVU0422at 475.749 kb on + strand, within DVU0422at 475.772 kb on - strand, within DVU0422at 475.783 kb on + strand, within DVU0422at 475.804 kb on - strand, within DVU0422at 475.893 kb on - strand, within DVU0422at 475.902 kb on - strand, within DVU0422at 475.973 kb on - strand, within DVU0422at 475.991 kb on - strand, within DVU0422at 475.996 kb on - strand, within DVU0422at 475.998 kb on + strand, within DVU0422at 476.006 kb on - strand, within DVU0422at 476.048 kb on + strand, within DVU0422at 476.061 kb on - strand, within DVU0422at 476.129 kb on + strand, within DVU0422at 476.147 kb on - strand, within DVU0422at 476.178 kb on - strand, within DVU0422at 476.264 kb on + strand, within DVU0422at 476.277 kb on + strand, within DVU0422at 476.308 kb on - strand, within DVU0422at 476.345 kb on + strand, within DVU0422at 476.353 kb on - strand, within DVU0422at 476.374 kb on - strand, within DVU0422at 476.374 kb on - strand, within DVU0422at 476.390 kb on + strand, within DVU0422at 476.397 kb on - strand, within DVU0422at 476.398 kb on - strand, within DVU0422at 476.398 kb on - strand, within DVU0422at 476.406 kb on + strand, within DVU0422at 476.408 kb on - strand, within DVU0422at 476.410 kb on + strand, within DVU0422at 476.446 kb on + strand, within DVU0422at 476.454 kb on - strand, within DVU0422at 476.454 kb on - strand, within DVU0422at 476.504 kb on + strand, within DVU0422at 476.506 kb on - strand, within DVU0422at 476.546 kb on - strand, within DVU0422at 476.597 kb on - strand, within DVU0422at 476.602 kb on - strand, within DVU0422at 476.652 kb on + strand, within DVU0422at 476.665 kb on + strand, within DVU0422at 476.688 kb on + strand, within DVU0422at 476.725 kb on - strand, within DVU0422at 476.858 kb on - strand, within DVU0422at 476.867 kb on + strand, within DVU0422at 476.967 kb on - strand, within DVU0422at 477.028 kb on + strand, within DVU0422at 477.036 kb on - strand, within DVU0422at 477.097 kb on + strand, within DVU0422at 477.169 kb on + strand, within DVU0422at 477.169 kb on + strand, within DVU0422at 477.177 kb on - strand, within DVU0422at 477.189 kb on + strand, within DVU0422at 477.405 kb on - strand, within DVU0422at 477.536 kb on - strand, within DVU0422at 477.556 kb on + strand, within DVU0422at 477.697 kb on + strand, within DVU0422at 477.779 kb on + strand, within DVU0422at 477.814 kb on - strand, within DVU0422at 477.842 kb on - strand, within DVU0422at 477.842 kb on - strand, within DVU0422at 477.853 kb on + strand, within DVU0422at 477.853 kb on + strand, within DVU0422at 477.872 kb on + strand, within DVU0422at 477.880 kb on - strand, within DVU0422at 477.986 kb on + strand, within DVU0422at 478.026 kb on + strand, within DVU0422at 478.028 kb on + strand, within DVU0422at 478.034 kb on - strand, within DVU0422at 478.044 kb on + strandat 478.077 kb on + strandat 478.089 kb on + strandat 478.091 kb on - strandat 478.094 kb on + strandat 478.160 kb on - strandat 478.208 kb on + strandat 478.208 kb on + strandat 478.208 kb on + strandat 478.216 kb on - strandat 478.297 kb on + strandat 478.395 kb on - strandat 478.429 kb on + strandat 478.437 kb on - strandat 478.437 kb on - strandat 478.437 kb on - strandat 478.459 kb on - strandat 478.507 kb on - strandat 478.509 kb on + strandat 478.517 kb on - strandat 478.591 kb on + strand, within DVU0423at 478.595 kb on + strand, within DVU0423at 478.610 kb on - strand, within DVU0423at 478.615 kb on + strand, within DVU0423at 478.634 kb on - strand, within DVU0423at 478.644 kb on - strand, within DVU0423at 478.648 kb on - strand, within DVU0423at 478.658 kb on + strand, within DVU0423at 478.727 kb on + strand, within DVU0423at 478.752 kb on + strand, within DVU0423at 478.752 kb on + strand, within DVU0423at 478.798 kb on - strand, within DVU0423at 478.878 kb on + strand, within DVU0423at 478.886 kb on - strand, within DVU0423at 479.006 kb on + strandat 479.006 kb on + strandat 479.014 kb on - strandat 479.021 kb on + strandat 479.029 kb on - strandat 479.029 kb on - strandat 479.067 kb on + strandat 479.075 kb on - strandat 479.075 kb on - strandat 479.107 kb on + strandat 479.112 kb on + strandat 479.112 kb on + strandat 479.202 kb on + strandat 479.210 kb on - strandat 479.232 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Chlorate 6.25 mM
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474,186 + DVU0421 0.25 -0.5
474,213 - DVU0421 0.28 -0.2
474,271 - DVU0421 0.35 -1.9
474,294 + DVU0421 0.37 -0.5
474,385 + DVU0421 0.48 -0.1
474,413 - DVU0421 0.51 -0.2
474,422 - DVU0421 0.52 -1.0
474,489 - DVU0421 0.60 +0.5
474,514 + DVU0421 0.63 -0.5
474,619 + DVU0421 0.75 +0.1
474,627 - DVU0421 0.76 +0.8
474,627 - DVU0421 0.76 -0.4
474,738 - DVU0421 0.88 -0.3
474,797 + -0.6
474,806 - -0.3
474,819 + +0.3
474,826 - -0.3
474,878 + -1.5
475,077 - -0.1
475,093 + +1.5
475,095 - +0.2
475,258 + +0.9
475,261 + +0.3
475,271 + -0.6
475,271 - +0.3
475,271 - +0.6
475,312 + +0.3
475,425 - +0.3
475,444 - +0.3
475,459 + -0.3
475,542 + DVU0422 0.12 -0.1
475,544 + DVU0422 0.12 +0.2
475,601 + DVU0422 0.14 +0.3
475,732 + DVU0422 0.18 +0.7
475,734 - DVU0422 0.18 +0.5
475,749 + DVU0422 0.19 -0.4
475,772 - DVU0422 0.19 -2.0
475,783 + DVU0422 0.20 -0.1
475,804 - DVU0422 0.20 +0.3
475,893 - DVU0422 0.23 -0.3
475,902 - DVU0422 0.23 +0.5
475,973 - DVU0422 0.26 +0.4
475,991 - DVU0422 0.26 +0.4
475,996 - DVU0422 0.26 +0.7
475,998 + DVU0422 0.26 -0.6
476,006 - DVU0422 0.27 +0.6
476,048 + DVU0422 0.28 +0.8
476,061 - DVU0422 0.28 +0.0
476,129 + DVU0422 0.31 -0.3
476,147 - DVU0422 0.31 +0.1
476,178 - DVU0422 0.32 -1.0
476,264 + DVU0422 0.35 +0.8
476,277 + DVU0422 0.35 -1.5
476,308 - DVU0422 0.36 +0.7
476,345 + DVU0422 0.37 -0.8
476,353 - DVU0422 0.37 -0.2
476,374 - DVU0422 0.38 -0.1
476,374 - DVU0422 0.38 +1.0
476,390 + DVU0422 0.39 +0.2
476,397 - DVU0422 0.39 +0.2
476,398 - DVU0422 0.39 -0.4
476,398 - DVU0422 0.39 -0.2
476,406 + DVU0422 0.39 +0.4
476,408 - DVU0422 0.39 -0.3
476,410 + DVU0422 0.39 -0.8
476,446 + DVU0422 0.40 -1.2
476,454 - DVU0422 0.41 +0.3
476,454 - DVU0422 0.41 +0.7
476,504 + DVU0422 0.42 +0.1
476,506 - DVU0422 0.42 +0.1
476,546 - DVU0422 0.43 +0.5
476,597 - DVU0422 0.45 +1.1
476,602 - DVU0422 0.45 -0.1
476,652 + DVU0422 0.47 -0.4
476,665 + DVU0422 0.47 -1.9
476,688 + DVU0422 0.48 -1.2
476,725 - DVU0422 0.49 -1.6
476,858 - DVU0422 0.53 -0.5
476,867 + DVU0422 0.53 +0.2
476,967 - DVU0422 0.57 +0.2
477,028 + DVU0422 0.58 +0.6
477,036 - DVU0422 0.59 +1.0
477,097 + DVU0422 0.61 +0.1
477,169 + DVU0422 0.63 +0.4
477,169 + DVU0422 0.63 -0.3
477,177 - DVU0422 0.63 +0.7
477,189 + DVU0422 0.63 +0.1
477,405 - DVU0422 0.70 -0.1
477,536 - DVU0422 0.74 -0.5
477,556 + DVU0422 0.75 -0.2
477,697 + DVU0422 0.79 +0.1
477,779 + DVU0422 0.82 +2.7
477,814 - DVU0422 0.83 +0.4
477,842 - DVU0422 0.84 -0.2
477,842 - DVU0422 0.84 -0.3
477,853 + DVU0422 0.84 +0.9
477,853 + DVU0422 0.84 +0.7
477,872 + DVU0422 0.85 +0.2
477,880 - DVU0422 0.85 -0.2
477,986 + DVU0422 0.88 +0.2
478,026 + DVU0422 0.89 +0.4
478,028 + DVU0422 0.89 +0.3
478,034 - DVU0422 0.90 -0.1
478,044 + +0.7
478,077 + +0.5
478,089 + +0.2
478,091 - -1.8
478,094 + +0.4
478,160 - +1.6
478,208 + +0.2
478,208 + -1.2
478,208 + -0.3
478,216 - +0.1
478,297 + +0.4
478,395 - -0.1
478,429 + -0.1
478,437 - -0.5
478,437 - +0.4
478,437 - +0.3
478,459 - -1.6
478,507 - -0.2
478,509 + -0.3
478,517 - +0.5
478,591 + DVU0423 0.17 -0.1
478,595 + DVU0423 0.18 +0.0
478,610 - DVU0423 0.22 +0.2
478,615 + DVU0423 0.23 +0.3
478,634 - DVU0423 0.27 +0.2
478,644 - DVU0423 0.30 -0.2
478,648 - DVU0423 0.31 -0.9
478,658 + DVU0423 0.33 +0.3
478,727 + DVU0423 0.49 -0.6
478,752 + DVU0423 0.55 -0.1
478,752 + DVU0423 0.55 -0.5
478,798 - DVU0423 0.66 -0.8
478,878 + DVU0423 0.85 -0.7
478,886 - DVU0423 0.86 +0.3
479,006 + +0.4
479,006 + -0.6
479,014 - +0.2
479,021 + +1.3
479,029 - -0.7
479,029 - -0.2
479,067 + -0.1
479,075 - -0.3
479,075 - -0.1
479,107 + -1.4
479,112 + -1.0
479,112 + -0.9
479,202 + -0.2
479,210 - -0.2
479,232 - -1.2

Or see this region's nucleotide sequence