Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2765

Experiment: MoYLS4 with Chlorate 6.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2763 and DORF20226 are separated by 98 nucleotidesDORF20226 and DVU2764 are separated by 109 nucleotidesDVU2764 and DVU2765 overlap by 1 nucleotidesDVU2765 and DVU2766 are separated by 87 nucleotidesDVU2766 and DVU2767 overlap by 4 nucleotidesDVU2767 and DVU2768 are separated by 91 nucleotides DVU2763: DVU2763 - TPR/GGDEF domain protein (TIGR), at 2,870,485 to 2,872,863 DVU2763 DORF20226: DORF20226 - no description, at 2,872,962 to 2,873,090 DORF20226 DVU2764: DVU2764 - nitroreductase family protein (TIGR), at 2,873,200 to 2,873,718 DVU2764 DVU2765: DVU2765 - metallo-beta-lactamase family protein (TIGR), at 2,873,718 to 2,874,344 DVU2765 DVU2766: DVU2766 - hypothetical protein (TIGR), at 2,874,432 to 2,874,599 DVU2766 DVU2767: DVU2767 - iron-sulfur flavoprotein, putative (TIGR), at 2,874,596 to 2,875,210 DVU2767 DVU2768: DVU2768 - comF family protein (TIGR), at 2,875,302 to 2,876,198 DVU2768 Position (kb) 2873 2874 2875Strain fitness (log2 ratio) -2 -1 0 1at 2872.748 kb on + strandat 2872.756 kb on - strandat 2872.848 kb on + strandat 2872.848 kb on - strandat 2872.848 kb on - strandat 2872.878 kb on + strandat 2872.881 kb on - strandat 2872.958 kb on + strandat 2872.958 kb on + strandat 2872.958 kb on + strandat 2872.958 kb on + strandat 2872.958 kb on + strandat 2872.958 kb on + strandat 2872.966 kb on - strandat 2872.966 kb on - strandat 2872.966 kb on - strandat 2872.966 kb on - strandat 2872.966 kb on - strandat 2872.967 kb on - strandat 2872.977 kb on - strand, within DORF20226at 2872.983 kb on + strand, within DORF20226at 2872.983 kb on + strand, within DORF20226at 2872.991 kb on - strand, within DORF20226at 2873.006 kb on + strand, within DORF20226at 2873.048 kb on + strand, within DORF20226at 2873.182 kb on + strandat 2873.206 kb on - strandat 2873.215 kb on + strandat 2873.215 kb on + strandat 2873.241 kb on + strandat 2873.253 kb on + strand, within DVU2764at 2873.261 kb on - strand, within DVU2764at 2873.261 kb on - strand, within DVU2764at 2873.261 kb on - strand, within DVU2764at 2873.261 kb on - strand, within DVU2764at 2873.292 kb on + strand, within DVU2764at 2873.342 kb on - strand, within DVU2764at 2873.582 kb on + strand, within DVU2764at 2873.695 kb on - strandat 2873.848 kb on + strand, within DVU2765at 2873.855 kb on - strand, within DVU2765at 2873.862 kb on - strand, within DVU2765at 2873.884 kb on + strand, within DVU2765at 2873.885 kb on - strand, within DVU2765at 2873.887 kb on - strand, within DVU2765at 2873.895 kb on + strand, within DVU2765at 2873.905 kb on + strand, within DVU2765at 2873.932 kb on + strand, within DVU2765at 2873.989 kb on - strand, within DVU2765at 2873.996 kb on - strand, within DVU2765at 2874.045 kb on + strand, within DVU2765at 2874.078 kb on + strand, within DVU2765at 2874.090 kb on + strand, within DVU2765at 2874.091 kb on - strand, within DVU2765at 2874.091 kb on - strand, within DVU2765at 2874.102 kb on - strand, within DVU2765at 2874.228 kb on - strand, within DVU2765at 2874.236 kb on + strand, within DVU2765at 2874.236 kb on + strand, within DVU2765at 2874.269 kb on + strand, within DVU2765at 2874.376 kb on + strandat 2874.403 kb on - strandat 2874.420 kb on + strandat 2874.422 kb on - strandat 2874.457 kb on + strand, within DVU2766at 2874.465 kb on - strand, within DVU2766at 2874.465 kb on - strand, within DVU2766at 2874.478 kb on - strand, within DVU2766at 2874.561 kb on + strand, within DVU2766at 2874.592 kb on + strandat 2875.200 kb on - strandat 2875.232 kb on + strandat 2875.268 kb on - strandat 2875.276 kb on + strandat 2875.337 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Chlorate 6.25 mM
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2,872,748 + +0.3
2,872,756 - -0.1
2,872,848 + -0.2
2,872,848 - +0.0
2,872,848 - -0.0
2,872,878 + -0.2
2,872,881 - -0.3
2,872,958 + +0.1
2,872,958 + -0.5
2,872,958 + +0.1
2,872,958 + +0.3
2,872,958 + -1.7
2,872,958 + -0.1
2,872,966 - -0.8
2,872,966 - -0.1
2,872,966 - -0.6
2,872,966 - -0.2
2,872,966 - +0.7
2,872,967 - +0.6
2,872,977 - DORF20226 0.12 -1.2
2,872,983 + DORF20226 0.16 -0.2
2,872,983 + DORF20226 0.16 -0.3
2,872,991 - DORF20226 0.22 -1.0
2,873,006 + DORF20226 0.34 -0.2
2,873,048 + DORF20226 0.67 -1.0
2,873,182 + +1.2
2,873,206 - -1.9
2,873,215 + -1.9
2,873,215 + -0.1
2,873,241 + -0.4
2,873,253 + DVU2764 0.10 -0.2
2,873,261 - DVU2764 0.12 -0.6
2,873,261 - DVU2764 0.12 +0.7
2,873,261 - DVU2764 0.12 +0.8
2,873,261 - DVU2764 0.12 -0.7
2,873,292 + DVU2764 0.18 -0.7
2,873,342 - DVU2764 0.27 -1.6
2,873,582 + DVU2764 0.74 -0.4
2,873,695 - -0.2
2,873,848 + DVU2765 0.21 -0.5
2,873,855 - DVU2765 0.22 -0.4
2,873,862 - DVU2765 0.23 -1.8
2,873,884 + DVU2765 0.26 -1.1
2,873,885 - DVU2765 0.27 -0.4
2,873,887 - DVU2765 0.27 -1.4
2,873,895 + DVU2765 0.28 -0.7
2,873,905 + DVU2765 0.30 -2.3
2,873,932 + DVU2765 0.34 -0.2
2,873,989 - DVU2765 0.43 -1.0
2,873,996 - DVU2765 0.44 +0.6
2,874,045 + DVU2765 0.52 -0.8
2,874,078 + DVU2765 0.57 -0.3
2,874,090 + DVU2765 0.59 +0.4
2,874,091 - DVU2765 0.59 -1.6
2,874,091 - DVU2765 0.59 -1.2
2,874,102 - DVU2765 0.61 +0.0
2,874,228 - DVU2765 0.81 -1.9
2,874,236 + DVU2765 0.83 -0.5
2,874,236 + DVU2765 0.83 -2.4
2,874,269 + DVU2765 0.88 -0.2
2,874,376 + -2.0
2,874,403 - -0.2
2,874,420 + +0.0
2,874,422 - +0.0
2,874,457 + DVU2766 0.15 -1.0
2,874,465 - DVU2766 0.20 -0.3
2,874,465 - DVU2766 0.20 +0.7
2,874,478 - DVU2766 0.27 -0.3
2,874,561 + DVU2766 0.77 -1.1
2,874,592 + -1.6
2,875,200 - -1.0
2,875,232 + -0.2
2,875,268 - -1.1
2,875,276 + -0.3
2,875,337 - -0.0

Or see this region's nucleotide sequence