Experiment: MoYLS4 with Chlorate 6.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2763 and DORF20226 are separated by 98 nucleotides DORF20226 and DVU2764 are separated by 109 nucleotides DVU2764 and DVU2765 overlap by 1 nucleotides DVU2765 and DVU2766 are separated by 87 nucleotides DVU2766 and DVU2767 overlap by 4 nucleotides DVU2767 and DVU2768 are separated by 91 nucleotides
DVU2763: DVU2763 - TPR/GGDEF domain protein (TIGR), at 2,870,485 to 2,872,863
DVU2763
DORF20226: DORF20226 - no description, at 2,872,962 to 2,873,090
DORF20226
DVU2764: DVU2764 - nitroreductase family protein (TIGR), at 2,873,200 to 2,873,718
DVU2764
DVU2765: DVU2765 - metallo-beta-lactamase family protein (TIGR), at 2,873,718 to 2,874,344
DVU2765
DVU2766: DVU2766 - hypothetical protein (TIGR), at 2,874,432 to 2,874,599
DVU2766
DVU2767: DVU2767 - iron-sulfur flavoprotein, putative (TIGR), at 2,874,596 to 2,875,210
DVU2767
DVU2768: DVU2768 - comF family protein (TIGR), at 2,875,302 to 2,876,198
DVU2768
Position (kb)
2873
2874
2875 Strain fitness (log2 ratio)
-2
-1
0
1 at 2872.748 kb on + strand at 2872.756 kb on - strand at 2872.848 kb on + strand at 2872.848 kb on - strand at 2872.848 kb on - strand at 2872.878 kb on + strand at 2872.881 kb on - strand at 2872.958 kb on + strand at 2872.958 kb on + strand at 2872.958 kb on + strand at 2872.958 kb on + strand at 2872.958 kb on + strand at 2872.958 kb on + strand at 2872.966 kb on - strand at 2872.966 kb on - strand at 2872.966 kb on - strand at 2872.966 kb on - strand at 2872.966 kb on - strand at 2872.967 kb on - strand at 2872.977 kb on - strand, within DORF20226 at 2872.983 kb on + strand, within DORF20226 at 2872.983 kb on + strand, within DORF20226 at 2872.991 kb on - strand, within DORF20226 at 2873.006 kb on + strand, within DORF20226 at 2873.048 kb on + strand, within DORF20226 at 2873.182 kb on + strand at 2873.206 kb on - strand at 2873.215 kb on + strand at 2873.215 kb on + strand at 2873.241 kb on + strand at 2873.253 kb on + strand, within DVU2764 at 2873.261 kb on - strand, within DVU2764 at 2873.261 kb on - strand, within DVU2764 at 2873.261 kb on - strand, within DVU2764 at 2873.261 kb on - strand, within DVU2764 at 2873.292 kb on + strand, within DVU2764 at 2873.342 kb on - strand, within DVU2764 at 2873.582 kb on + strand, within DVU2764 at 2873.695 kb on - strand at 2873.848 kb on + strand, within DVU2765 at 2873.855 kb on - strand, within DVU2765 at 2873.862 kb on - strand, within DVU2765 at 2873.884 kb on + strand, within DVU2765 at 2873.885 kb on - strand, within DVU2765 at 2873.887 kb on - strand, within DVU2765 at 2873.895 kb on + strand, within DVU2765 at 2873.905 kb on + strand, within DVU2765 at 2873.932 kb on + strand, within DVU2765 at 2873.989 kb on - strand, within DVU2765 at 2873.996 kb on - strand, within DVU2765 at 2874.045 kb on + strand, within DVU2765 at 2874.078 kb on + strand, within DVU2765 at 2874.090 kb on + strand, within DVU2765 at 2874.091 kb on - strand, within DVU2765 at 2874.091 kb on - strand, within DVU2765 at 2874.102 kb on - strand, within DVU2765 at 2874.228 kb on - strand, within DVU2765 at 2874.236 kb on + strand, within DVU2765 at 2874.236 kb on + strand, within DVU2765 at 2874.269 kb on + strand, within DVU2765 at 2874.376 kb on + strand at 2874.403 kb on - strand at 2874.420 kb on + strand at 2874.422 kb on - strand at 2874.457 kb on + strand, within DVU2766 at 2874.465 kb on - strand, within DVU2766 at 2874.465 kb on - strand, within DVU2766 at 2874.478 kb on - strand, within DVU2766 at 2874.561 kb on + strand, within DVU2766 at 2874.592 kb on + strand at 2875.200 kb on - strand at 2875.232 kb on + strand at 2875.268 kb on - strand at 2875.276 kb on + strand at 2875.337 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Chlorate 6.25 mM remove 2,872,748 + +0.3 2,872,756 - -0.1 2,872,848 + -0.2 2,872,848 - +0.0 2,872,848 - -0.0 2,872,878 + -0.2 2,872,881 - -0.3 2,872,958 + +0.1 2,872,958 + -0.5 2,872,958 + +0.1 2,872,958 + +0.3 2,872,958 + -1.7 2,872,958 + -0.1 2,872,966 - -0.8 2,872,966 - -0.1 2,872,966 - -0.6 2,872,966 - -0.2 2,872,966 - +0.7 2,872,967 - +0.6 2,872,977 - DORF20226 0.12 -1.2 2,872,983 + DORF20226 0.16 -0.2 2,872,983 + DORF20226 0.16 -0.3 2,872,991 - DORF20226 0.22 -1.0 2,873,006 + DORF20226 0.34 -0.2 2,873,048 + DORF20226 0.67 -1.0 2,873,182 + +1.2 2,873,206 - -1.9 2,873,215 + -1.9 2,873,215 + -0.1 2,873,241 + -0.4 2,873,253 + DVU2764 0.10 -0.2 2,873,261 - DVU2764 0.12 -0.6 2,873,261 - DVU2764 0.12 +0.7 2,873,261 - DVU2764 0.12 +0.8 2,873,261 - DVU2764 0.12 -0.7 2,873,292 + DVU2764 0.18 -0.7 2,873,342 - DVU2764 0.27 -1.6 2,873,582 + DVU2764 0.74 -0.4 2,873,695 - -0.2 2,873,848 + DVU2765 0.21 -0.5 2,873,855 - DVU2765 0.22 -0.4 2,873,862 - DVU2765 0.23 -1.8 2,873,884 + DVU2765 0.26 -1.1 2,873,885 - DVU2765 0.27 -0.4 2,873,887 - DVU2765 0.27 -1.4 2,873,895 + DVU2765 0.28 -0.7 2,873,905 + DVU2765 0.30 -2.3 2,873,932 + DVU2765 0.34 -0.2 2,873,989 - DVU2765 0.43 -1.0 2,873,996 - DVU2765 0.44 +0.6 2,874,045 + DVU2765 0.52 -0.8 2,874,078 + DVU2765 0.57 -0.3 2,874,090 + DVU2765 0.59 +0.4 2,874,091 - DVU2765 0.59 -1.6 2,874,091 - DVU2765 0.59 -1.2 2,874,102 - DVU2765 0.61 +0.0 2,874,228 - DVU2765 0.81 -1.9 2,874,236 + DVU2765 0.83 -0.5 2,874,236 + DVU2765 0.83 -2.4 2,874,269 + DVU2765 0.88 -0.2 2,874,376 + -2.0 2,874,403 - -0.2 2,874,420 + +0.0 2,874,422 - +0.0 2,874,457 + DVU2766 0.15 -1.0 2,874,465 - DVU2766 0.20 -0.3 2,874,465 - DVU2766 0.20 +0.7 2,874,478 - DVU2766 0.27 -0.3 2,874,561 + DVU2766 0.77 -1.1 2,874,592 + -1.6 2,875,200 - -1.0 2,875,232 + -0.2 2,875,268 - -1.1 2,875,276 + -0.3 2,875,337 - -0.0
Or see this region's nucleotide sequence