Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2227

Experiment: MoYLS4 with Chlorate 6.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntaccC and DVU2227 overlap by 20 nucleotidesDVU2227 and DVU2228 are separated by 4 nucleotidesDVU2228 and motA-2 overlap by 17 nucleotides DVU2226: accC - acetyl-CoA carboxylase, biotin carboxylase, putative (TIGR), at 2,318,897 to 2,320,312 accC DVU2227: DVU2227 - hypothetical protein (TIGR), at 2,320,293 to 2,320,736 DVU2227 DVU2228: DVU2228 - motB protein, putative (TIGR), at 2,320,741 to 2,321,475 DVU2228 DVU2229: motA-2 - chemotaxis protein MotA (TIGR), at 2,321,459 to 2,322,220 motA-2 Position (kb) 2320 2321Strain fitness (log2 ratio) -3 -2 -1 0 1at 2320.431 kb on + strand, within DVU2227at 2320.439 kb on - strand, within DVU2227at 2320.534 kb on + strand, within DVU2227at 2320.537 kb on - strand, within DVU2227at 2320.570 kb on + strand, within DVU2227at 2320.588 kb on - strand, within DVU2227at 2320.663 kb on + strand, within DVU2227at 2320.663 kb on + strand, within DVU2227at 2320.673 kb on + strand, within DVU2227at 2320.673 kb on + strand, within DVU2227at 2320.673 kb on + strand, within DVU2227at 2320.673 kb on + strand, within DVU2227at 2320.689 kb on - strand, within DVU2227at 2320.769 kb on + strandat 2320.769 kb on + strandat 2320.800 kb on + strandat 2320.939 kb on - strand, within DVU2228at 2320.954 kb on + strand, within DVU2228at 2321.044 kb on - strand, within DVU2228at 2321.058 kb on + strand, within DVU2228at 2321.093 kb on - strand, within DVU2228at 2321.120 kb on - strand, within DVU2228at 2321.152 kb on + strand, within DVU2228at 2321.228 kb on + strand, within DVU2228at 2321.236 kb on - strand, within DVU2228at 2321.236 kb on - strand, within DVU2228at 2321.529 kb on + strandat 2321.576 kb on - strand, within motA-2at 2321.587 kb on - strand, within motA-2at 2321.604 kb on + strand, within motA-2at 2321.612 kb on - strand, within motA-2at 2321.613 kb on - strand, within motA-2at 2321.663 kb on - strand, within motA-2at 2321.681 kb on + strand, within motA-2at 2321.692 kb on + strand, within motA-2

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Chlorate 6.25 mM
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2,320,431 + DVU2227 0.31 -0.2
2,320,439 - DVU2227 0.33 -1.2
2,320,534 + DVU2227 0.54 -1.1
2,320,537 - DVU2227 0.55 +0.1
2,320,570 + DVU2227 0.62 -1.1
2,320,588 - DVU2227 0.66 -2.9
2,320,663 + DVU2227 0.83 -0.7
2,320,663 + DVU2227 0.83 +0.7
2,320,673 + DVU2227 0.86 -0.9
2,320,673 + DVU2227 0.86 -0.6
2,320,673 + DVU2227 0.86 -0.9
2,320,673 + DVU2227 0.86 -0.6
2,320,689 - DVU2227 0.89 -0.4
2,320,769 + -0.3
2,320,769 + -0.3
2,320,800 + -0.1
2,320,939 - DVU2228 0.27 +0.9
2,320,954 + DVU2228 0.29 -0.1
2,321,044 - DVU2228 0.41 -1.6
2,321,058 + DVU2228 0.43 -0.3
2,321,093 - DVU2228 0.48 +0.0
2,321,120 - DVU2228 0.52 -1.2
2,321,152 + DVU2228 0.56 +0.1
2,321,228 + DVU2228 0.66 -1.3
2,321,236 - DVU2228 0.67 -0.3
2,321,236 - DVU2228 0.67 +0.6
2,321,529 + -0.1
2,321,576 - motA-2 DVU2229 0.15 -2.5
2,321,587 - motA-2 DVU2229 0.17 -0.3
2,321,604 + motA-2 DVU2229 0.19 +0.2
2,321,612 - motA-2 DVU2229 0.20 -0.5
2,321,613 - motA-2 DVU2229 0.20 -1.0
2,321,663 - motA-2 DVU2229 0.27 +0.3
2,321,681 + motA-2 DVU2229 0.29 +0.9
2,321,692 + motA-2 DVU2229 0.31 -0.5

Or see this region's nucleotide sequence