Experiment: MoYLS4 with Nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt b3486 and DVU0127 are separated by 3 nucleotides DVU0127 and DVU0128 are separated by 215 nucleotides
DVU0126: b3486 - ABC transporter, ATP-binding protein (TIGR), at 159,343 to 162,858
b3486
DVU0127: DVU0127 - membrane protein, putative (TIGR), at 162,862 to 163,974
DVU0127
DVU0128: DVU0128 - membrane protein, putative (TIGR), at 164,190 to 165,248
DVU0128
Position (kb) 162
163
164 Strain fitness (log2 ratio) -1
0
1
2
3 at 161.935 kb on + strand, within b3486 at 162.060 kb on + strand, within b3486 at 162.068 kb on + strand, within b3486 at 162.102 kb on - strand, within b3486 at 162.113 kb on + strand, within b3486 at 162.128 kb on + strand, within b3486 at 162.183 kb on + strand, within b3486 at 162.211 kb on - strand, within b3486 at 162.211 kb on - strand, within b3486 at 162.227 kb on + strand, within b3486 at 162.306 kb on + strand, within b3486 at 162.323 kb on + strand, within b3486 at 162.428 kb on - strand, within b3486 at 162.446 kb on + strand, within b3486 at 162.446 kb on + strand, within b3486 at 162.454 kb on - strand, within b3486 at 162.554 kb on + strand at 162.564 kb on + strand at 162.564 kb on + strand at 162.636 kb on - strand at 162.664 kb on - strand at 162.673 kb on + strand at 162.692 kb on - strand at 162.702 kb on - strand at 162.741 kb on - strand at 162.821 kb on + strand at 162.903 kb on + strand at 162.905 kb on + strand at 162.915 kb on + strand at 162.915 kb on + strand at 162.923 kb on - strand at 162.923 kb on - strand at 162.960 kb on + strand at 163.057 kb on + strand, within DVU0127 at 163.076 kb on - strand, within DVU0127 at 163.133 kb on - strand, within DVU0127 at 163.150 kb on - strand, within DVU0127 at 163.154 kb on + strand, within DVU0127 at 163.159 kb on + strand, within DVU0127 at 163.160 kb on - strand, within DVU0127 at 163.277 kb on - strand, within DVU0127 at 163.303 kb on + strand, within DVU0127 at 163.303 kb on + strand, within DVU0127 at 163.303 kb on + strand, within DVU0127 at 163.325 kb on - strand, within DVU0127 at 163.364 kb on + strand, within DVU0127 at 163.364 kb on + strand, within DVU0127 at 163.372 kb on - strand, within DVU0127 at 163.434 kb on + strand, within DVU0127 at 163.471 kb on - strand, within DVU0127 at 163.486 kb on - strand, within DVU0127 at 163.496 kb on - strand, within DVU0127 at 163.511 kb on - strand, within DVU0127 at 163.574 kb on - strand, within DVU0127 at 163.578 kb on + strand, within DVU0127 at 163.591 kb on - strand, within DVU0127 at 163.719 kb on - strand, within DVU0127 at 163.759 kb on - strand, within DVU0127 at 163.791 kb on - strand, within DVU0127 at 163.818 kb on + strand, within DVU0127 at 163.825 kb on + strand, within DVU0127 at 163.826 kb on - strand, within DVU0127 at 163.885 kb on + strand at 163.966 kb on - strand at 163.972 kb on - strand at 164.034 kb on + strand at 164.034 kb on + strand at 164.042 kb on - strand at 164.241 kb on + strand at 164.249 kb on - strand at 164.272 kb on + strand at 164.282 kb on + strand at 164.290 kb on - strand at 164.443 kb on - strand, within DVU0128 at 164.443 kb on - strand, within DVU0128 at 164.457 kb on + strand, within DVU0128 at 164.460 kb on - strand, within DVU0128 at 164.495 kb on - strand, within DVU0128 at 164.501 kb on + strand, within DVU0128 at 164.501 kb on + strand, within DVU0128 at 164.501 kb on + strand, within DVU0128 at 164.514 kb on + strand, within DVU0128 at 164.527 kb on + strand, within DVU0128 at 164.593 kb on + strand, within DVU0128 at 164.742 kb on - strand, within DVU0128 at 164.859 kb on - strand, within DVU0128
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Nitrate 50 mM remove 161,935 + b3486 DVU0126 0.74 +1.1 162,060 + b3486 DVU0126 0.77 +0.4 162,068 + b3486 DVU0126 0.78 +0.6 162,102 - b3486 DVU0126 0.78 -0.1 162,113 + b3486 DVU0126 0.79 -0.0 162,128 + b3486 DVU0126 0.79 +0.1 162,183 + b3486 DVU0126 0.81 +0.2 162,211 - b3486 DVU0126 0.82 -0.0 162,211 - b3486 DVU0126 0.82 +0.5 162,227 + b3486 DVU0126 0.82 +0.3 162,306 + b3486 DVU0126 0.84 +2.1 162,323 + b3486 DVU0126 0.85 +1.1 162,428 - b3486 DVU0126 0.88 -0.2 162,446 + b3486 DVU0126 0.88 +0.4 162,446 + b3486 DVU0126 0.88 +0.2 162,454 - b3486 DVU0126 0.88 +0.5 162,554 + -0.1 162,564 + +0.9 162,564 + +0.1 162,636 - -0.1 162,664 - -0.9 162,673 + +0.2 162,692 - +0.3 162,702 - +0.1 162,741 - +2.0 162,821 + -0.2 162,903 + +0.3 162,905 + +0.7 162,915 + +0.2 162,915 + +0.6 162,923 - +0.2 162,923 - +0.3 162,960 + +2.1 163,057 + DVU0127 0.18 +0.7 163,076 - DVU0127 0.19 -0.3 163,133 - DVU0127 0.24 +0.1 163,150 - DVU0127 0.26 +0.3 163,154 + DVU0127 0.26 -0.3 163,159 + DVU0127 0.27 -0.4 163,160 - DVU0127 0.27 +0.2 163,277 - DVU0127 0.37 +0.1 163,303 + DVU0127 0.40 +2.7 163,303 + DVU0127 0.40 +0.2 163,303 + DVU0127 0.40 -0.3 163,325 - DVU0127 0.42 +0.5 163,364 + DVU0127 0.45 -0.9 163,364 + DVU0127 0.45 +0.4 163,372 - DVU0127 0.46 +0.3 163,434 + DVU0127 0.51 +0.9 163,471 - DVU0127 0.55 +0.2 163,486 - DVU0127 0.56 +0.1 163,496 - DVU0127 0.57 +0.6 163,511 - DVU0127 0.58 +1.2 163,574 - DVU0127 0.64 -0.3 163,578 + DVU0127 0.64 +2.9 163,591 - DVU0127 0.65 +0.1 163,719 - DVU0127 0.77 +0.0 163,759 - DVU0127 0.81 -0.3 163,791 - DVU0127 0.83 +0.2 163,818 + DVU0127 0.86 +0.3 163,825 + DVU0127 0.87 +2.5 163,826 - DVU0127 0.87 +0.7 163,885 + +2.5 163,966 - +0.4 163,972 - +0.0 164,034 + -0.9 164,034 + -1.1 164,042 - -0.9 164,241 + -0.1 164,249 - +0.4 164,272 + -0.2 164,282 + +0.9 164,290 - -0.2 164,443 - DVU0128 0.24 -0.6 164,443 - DVU0128 0.24 -0.6 164,457 + DVU0128 0.25 -0.5 164,460 - DVU0128 0.25 +1.3 164,495 - DVU0128 0.29 +1.4 164,501 + DVU0128 0.29 +0.6 164,501 + DVU0128 0.29 +0.5 164,501 + DVU0128 0.29 -0.7 164,514 + DVU0128 0.31 -0.3 164,527 + DVU0128 0.32 -0.3 164,593 + DVU0128 0.38 +1.6 164,742 - DVU0128 0.52 -0.5 164,859 - DVU0128 0.63 -0.6
Or see this region's nucleotide sequence