Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0041

Experiment: MoYLS4 with Nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0039 and DVU0040 are separated by 179 nucleotidesDVU0040 and DVU0041 are separated by 192 nucleotidesDVU0041 and DVU0042 are separated by 544 nucleotides DVU0039: DVU0039 - C4-type zinc finger protein, DksA/TraR family (TIGR), at 45,740 to 46,270 DVU0039 DVU0040: DVU0040 - hypothetical protein (TIGR), at 46,450 to 47,064 DVU0040 DVU0041: DVU0041 - transglycosylase, SLT family (TIGR), at 47,257 to 49,020 DVU0041 DVU0042: DVU0042 - RNA methyltransferase, TrmH family, group 3 (TIGR), at 49,565 to 50,314 DVU0042 Position (kb) 47 48 49 50Strain fitness (log2 ratio) -2 -1 0 1 2 3at 46.264 kb on + strandat 46.267 kb on - strandat 46.272 kb on - strandat 46.361 kb on - strandat 46.411 kb on + strandat 46.478 kb on + strandat 46.541 kb on + strand, within DVU0040at 46.554 kb on - strand, within DVU0040at 46.574 kb on - strand, within DVU0040at 46.620 kb on + strand, within DVU0040at 46.620 kb on + strand, within DVU0040at 46.667 kb on + strand, within DVU0040at 46.692 kb on - strand, within DVU0040at 46.728 kb on + strand, within DVU0040at 46.799 kb on - strand, within DVU0040at 46.826 kb on + strand, within DVU0040at 46.833 kb on + strand, within DVU0040at 46.905 kb on + strand, within DVU0040at 46.905 kb on + strand, within DVU0040at 46.905 kb on + strand, within DVU0040at 46.954 kb on + strand, within DVU0040at 46.959 kb on + strand, within DVU0040at 47.002 kb on - strand, within DVU0040at 47.035 kb on - strandat 47.054 kb on - strandat 47.150 kb on + strandat 47.273 kb on + strandat 47.290 kb on + strandat 47.317 kb on + strandat 47.345 kb on + strandat 47.353 kb on - strandat 47.375 kb on + strandat 47.375 kb on + strandat 47.375 kb on + strandat 47.391 kb on - strandat 47.430 kb on + strandat 47.430 kb on + strandat 47.430 kb on + strandat 47.430 kb on + strandat 47.438 kb on - strand, within DVU0041at 47.438 kb on - strand, within DVU0041at 47.502 kb on + strand, within DVU0041at 47.510 kb on - strand, within DVU0041at 47.513 kb on + strand, within DVU0041at 47.532 kb on - strand, within DVU0041at 47.534 kb on - strand, within DVU0041at 47.536 kb on - strand, within DVU0041at 47.541 kb on - strand, within DVU0041at 47.582 kb on - strand, within DVU0041at 47.635 kb on - strand, within DVU0041at 47.655 kb on + strand, within DVU0041at 47.663 kb on - strand, within DVU0041at 47.682 kb on + strand, within DVU0041at 47.703 kb on - strand, within DVU0041at 47.703 kb on - strand, within DVU0041at 47.742 kb on + strand, within DVU0041at 47.811 kb on - strand, within DVU0041at 47.818 kb on - strand, within DVU0041at 47.827 kb on - strand, within DVU0041at 47.851 kb on - strand, within DVU0041at 47.919 kb on + strand, within DVU0041at 47.921 kb on + strand, within DVU0041at 47.921 kb on + strand, within DVU0041at 47.921 kb on + strand, within DVU0041at 47.921 kb on + strand, within DVU0041at 47.921 kb on + strand, within DVU0041at 47.921 kb on + strand, within DVU0041at 47.921 kb on + strand, within DVU0041at 47.921 kb on + strand, within DVU0041at 47.921 kb on + strand, within DVU0041at 47.921 kb on + strand, within DVU0041at 47.929 kb on - strand, within DVU0041at 47.929 kb on - strand, within DVU0041at 47.929 kb on - strand, within DVU0041at 47.929 kb on - strand, within DVU0041at 47.929 kb on - strand, within DVU0041at 47.929 kb on - strand, within DVU0041at 47.929 kb on - strand, within DVU0041at 47.929 kb on - strand, within DVU0041at 47.958 kb on - strand, within DVU0041at 47.971 kb on + strand, within DVU0041at 48.030 kb on + strand, within DVU0041at 48.038 kb on - strand, within DVU0041at 48.203 kb on + strand, within DVU0041at 48.248 kb on + strand, within DVU0041at 48.299 kb on + strand, within DVU0041at 48.338 kb on + strand, within DVU0041at 48.338 kb on + strand, within DVU0041at 48.403 kb on - strand, within DVU0041at 48.434 kb on + strand, within DVU0041at 48.442 kb on - strand, within DVU0041at 48.489 kb on - strand, within DVU0041at 48.489 kb on - strand, within DVU0041at 48.505 kb on - strand, within DVU0041at 48.553 kb on - strand, within DVU0041at 48.618 kb on - strand, within DVU0041at 48.681 kb on + strand, within DVU0041at 48.703 kb on - strand, within DVU0041at 48.726 kb on + strand, within DVU0041at 48.772 kb on + strand, within DVU0041at 48.785 kb on + strand, within DVU0041at 48.874 kb on + strandat 48.875 kb on + strandat 48.943 kb on - strandat 48.977 kb on - strandat 48.995 kb on - strandat 49.040 kb on + strandat 49.040 kb on + strandat 49.040 kb on - strandat 49.226 kb on + strandat 49.254 kb on + strandat 49.257 kb on - strandat 49.274 kb on + strandat 49.274 kb on + strandat 49.274 kb on + strandat 49.274 kb on + strandat 49.274 kb on + strandat 49.277 kb on - strandat 49.282 kb on - strandat 49.282 kb on - strandat 49.314 kb on - strandat 49.314 kb on - strandat 49.314 kb on - strandat 49.428 kb on - strandat 49.488 kb on - strandat 49.520 kb on + strandat 49.552 kb on + strandat 49.552 kb on + strandat 49.594 kb on + strandat 49.594 kb on + strandat 49.594 kb on + strandat 49.594 kb on + strandat 49.646 kb on - strand, within DVU0042at 49.699 kb on + strand, within DVU0042at 49.761 kb on - strand, within DVU0042at 49.761 kb on - strand, within DVU0042at 49.769 kb on + strand, within DVU0042at 49.769 kb on + strand, within DVU0042at 49.769 kb on + strand, within DVU0042at 49.778 kb on + strand, within DVU0042at 49.778 kb on + strand, within DVU0042at 49.782 kb on - strand, within DVU0042at 49.874 kb on - strand, within DVU0042at 49.874 kb on - strand, within DVU0042at 49.877 kb on + strand, within DVU0042at 49.930 kb on - strand, within DVU0042at 49.932 kb on + strand, within DVU0042at 49.987 kb on - strand, within DVU0042

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nitrate 50 mM
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46,264 + +0.3
46,267 - -0.6
46,272 - -0.0
46,361 - +0.2
46,411 + -0.2
46,478 + +0.2
46,541 + DVU0040 0.15 -0.1
46,554 - DVU0040 0.17 +0.0
46,574 - DVU0040 0.20 -0.3
46,620 + DVU0040 0.28 +1.5
46,620 + DVU0040 0.28 +0.4
46,667 + DVU0040 0.35 +3.0
46,692 - DVU0040 0.39 +0.7
46,728 + DVU0040 0.45 -0.0
46,799 - DVU0040 0.57 +0.4
46,826 + DVU0040 0.61 -0.0
46,833 + DVU0040 0.62 +2.0
46,905 + DVU0040 0.74 -1.1
46,905 + DVU0040 0.74 -0.6
46,905 + DVU0040 0.74 -0.3
46,954 + DVU0040 0.82 -0.5
46,959 + DVU0040 0.83 +1.0
47,002 - DVU0040 0.90 +0.7
47,035 - -0.3
47,054 - +0.5
47,150 + -0.4
47,273 + -2.4
47,290 + -0.2
47,317 + +0.4
47,345 + -0.1
47,353 - -0.1
47,375 + -0.0
47,375 + +1.1
47,375 + -0.0
47,391 - +0.5
47,430 + +0.9
47,430 + +0.1
47,430 + -0.0
47,430 + -0.0
47,438 - DVU0041 0.10 +1.1
47,438 - DVU0041 0.10 -1.7
47,502 + DVU0041 0.14 +0.2
47,510 - DVU0041 0.14 +0.5
47,513 + DVU0041 0.15 +0.3
47,532 - DVU0041 0.16 -0.5
47,534 - DVU0041 0.16 -2.3
47,536 - DVU0041 0.16 -0.4
47,541 - DVU0041 0.16 +0.7
47,582 - DVU0041 0.18 +0.3
47,635 - DVU0041 0.21 +2.0
47,655 + DVU0041 0.23 +0.4
47,663 - DVU0041 0.23 +0.5
47,682 + DVU0041 0.24 +0.3
47,703 - DVU0041 0.25 -1.1
47,703 - DVU0041 0.25 +0.8
47,742 + DVU0041 0.27 +0.3
47,811 - DVU0041 0.31 +0.2
47,818 - DVU0041 0.32 +0.8
47,827 - DVU0041 0.32 +0.3
47,851 - DVU0041 0.34 +0.7
47,919 + DVU0041 0.38 -0.1
47,921 + DVU0041 0.38 -0.0
47,921 + DVU0041 0.38 +0.3
47,921 + DVU0041 0.38 +0.4
47,921 + DVU0041 0.38 +0.5
47,921 + DVU0041 0.38 +0.6
47,921 + DVU0041 0.38 -1.7
47,921 + DVU0041 0.38 +0.6
47,921 + DVU0041 0.38 +0.2
47,921 + DVU0041 0.38 +0.3
47,921 + DVU0041 0.38 +0.3
47,929 - DVU0041 0.38 -0.2
47,929 - DVU0041 0.38 +1.7
47,929 - DVU0041 0.38 -0.1
47,929 - DVU0041 0.38 -0.2
47,929 - DVU0041 0.38 -0.0
47,929 - DVU0041 0.38 -0.9
47,929 - DVU0041 0.38 +0.4
47,929 - DVU0041 0.38 +2.7
47,958 - DVU0041 0.40 +0.6
47,971 + DVU0041 0.40 -0.2
48,030 + DVU0041 0.44 +1.0
48,038 - DVU0041 0.44 +0.4
48,203 + DVU0041 0.54 -0.1
48,248 + DVU0041 0.56 +0.4
48,299 + DVU0041 0.59 -0.9
48,338 + DVU0041 0.61 +0.8
48,338 + DVU0041 0.61 +1.0
48,403 - DVU0041 0.65 +0.2
48,434 + DVU0041 0.67 +1.1
48,442 - DVU0041 0.67 +0.5
48,489 - DVU0041 0.70 +0.3
48,489 - DVU0041 0.70 +0.2
48,505 - DVU0041 0.71 -0.1
48,553 - DVU0041 0.73 +1.0
48,618 - DVU0041 0.77 -0.2
48,681 + DVU0041 0.81 -0.8
48,703 - DVU0041 0.82 +0.5
48,726 + DVU0041 0.83 -1.8
48,772 + DVU0041 0.86 +0.4
48,785 + DVU0041 0.87 +0.5
48,874 + -0.1
48,875 + -0.3
48,943 - +0.1
48,977 - -0.2
48,995 - -0.4
49,040 + -0.4
49,040 + -0.1
49,040 - +0.8
49,226 + +0.5
49,254 + +1.9
49,257 - +0.0
49,274 + -0.3
49,274 + +0.1
49,274 + +0.1
49,274 + -1.0
49,274 + -0.5
49,277 - -0.9
49,282 - +0.9
49,282 - -0.6
49,314 - -0.9
49,314 - +0.0
49,314 - -0.8
49,428 - +0.3
49,488 - -1.3
49,520 + +0.7
49,552 + -0.9
49,552 + -0.3
49,594 + -0.5
49,594 + -0.0
49,594 + -1.1
49,594 + -0.0
49,646 - DVU0042 0.11 -1.2
49,699 + DVU0042 0.18 -1.6
49,761 - DVU0042 0.26 -0.3
49,761 - DVU0042 0.26 -0.0
49,769 + DVU0042 0.27 -0.2
49,769 + DVU0042 0.27 -0.5
49,769 + DVU0042 0.27 -0.8
49,778 + DVU0042 0.28 -0.5
49,778 + DVU0042 0.28 -1.2
49,782 - DVU0042 0.29 -2.1
49,874 - DVU0042 0.41 -0.6
49,874 - DVU0042 0.41 -0.4
49,877 + DVU0042 0.42 -1.1
49,930 - DVU0042 0.49 -0.9
49,932 + DVU0042 0.49 -0.8
49,987 - DVU0042 0.56 +1.1

Or see this region's nucleotide sequence