Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2319

Experiment: MoYLS4 with Nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrbr2 and DVU2319 are separated by 176 nucleotidesDVU2319 and DVU2320 are separated by 25 nucleotides DVU2318: rbr2 - rubrerythrin, putative (TIGR), at 2,413,715 to 2,414,209 rbr2 DVU2319: DVU2319 - transcriptional regulator domain protein (TIGR), at 2,414,386 to 2,414,991 DVU2319 DVU2320: DVU2320 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase family protein (TIGR), at 2,415,017 to 2,416,855 DVU2320 Position (kb) 2414 2415Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 2413.415 kb on + strandat 2413.538 kb on + strandat 2413.553 kb on + strandat 2413.597 kb on - strandat 2413.611 kb on - strandat 2413.759 kb on + strandat 2413.767 kb on - strand, within rbr2at 2413.767 kb on - strand, within rbr2at 2413.837 kb on - strand, within rbr2at 2414.037 kb on - strand, within rbr2at 2414.037 kb on - strand, within rbr2at 2414.037 kb on - strand, within rbr2at 2414.104 kb on + strand, within rbr2at 2414.129 kb on + strand, within rbr2at 2414.183 kb on - strandat 2414.236 kb on - strandat 2414.362 kb on - strandat 2414.362 kb on - strandat 2414.381 kb on + strandat 2414.440 kb on + strandat 2414.455 kb on - strand, within DVU2319at 2414.514 kb on + strand, within DVU2319at 2414.514 kb on + strand, within DVU2319at 2414.622 kb on + strand, within DVU2319at 2414.713 kb on + strand, within DVU2319at 2414.908 kb on + strand, within DVU2319

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nitrate 50 mM
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2,413,415 + -0.6
2,413,538 + -0.3
2,413,553 + +0.5
2,413,597 - +1.1
2,413,611 - -0.1
2,413,759 + -0.0
2,413,767 - rbr2 DVU2318 0.11 +0.2
2,413,767 - rbr2 DVU2318 0.11 -0.1
2,413,837 - rbr2 DVU2318 0.25 -0.2
2,414,037 - rbr2 DVU2318 0.65 +0.7
2,414,037 - rbr2 DVU2318 0.65 -0.2
2,414,037 - rbr2 DVU2318 0.65 -0.4
2,414,104 + rbr2 DVU2318 0.79 -0.2
2,414,129 + rbr2 DVU2318 0.84 -0.2
2,414,183 - -1.9
2,414,236 - -0.4
2,414,362 - +5.7
2,414,362 - +5.6
2,414,381 + -0.0
2,414,440 + +6.1
2,414,455 - DVU2319 0.11 +6.2
2,414,514 + DVU2319 0.21 +5.7
2,414,514 + DVU2319 0.21 +5.5
2,414,622 + DVU2319 0.39 +6.2
2,414,713 + DVU2319 0.54 +6.4
2,414,908 + DVU2319 0.86 +6.4

Or see this region's nucleotide sequence