Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1762

Experiment: MoYLS4 with Chloride 62.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1760 and DVU1762 are separated by 248 nucleotidesDVU1762 and DVU1764 are separated by 793 nucleotides DVU1760: DVU1760 - transcriptional regulator, TetR family (TIGR), at 1,824,953 to 1,825,537 DVU1760 DVU1762: DVU1762 - membrane protein, putative (TIGR), at 1,825,786 to 1,826,244 DVU1762 DVU1764: DVU1764 - conserved hypothetical protein (TIGR), at 1,827,038 to 1,827,307 DVU1764 Position (kb) 1825 1826 1827Strain fitness (log2 ratio) -2 -1 0 1 2at 1824.922 kb on - strandat 1824.987 kb on + strandat 1825.017 kb on + strand, within DVU1760at 1825.017 kb on + strand, within DVU1760at 1825.321 kb on + strand, within DVU1760at 1825.475 kb on - strand, within DVU1760at 1825.760 kb on + strandat 1825.845 kb on - strand, within DVU1762at 1825.902 kb on + strand, within DVU1762at 1825.951 kb on + strand, within DVU1762at 1825.959 kb on - strand, within DVU1762at 1825.959 kb on - strand, within DVU1762at 1826.132 kb on - strand, within DVU1762at 1826.396 kb on - strandat 1826.420 kb on + strandat 1826.420 kb on + strandat 1826.428 kb on - strandat 1826.442 kb on + strandat 1826.450 kb on - strandat 1826.451 kb on - strandat 1826.451 kb on - strandat 1826.451 kb on - strandat 1826.504 kb on - strandat 1826.672 kb on - strandat 1826.730 kb on + strandat 1826.730 kb on + strandat 1826.814 kb on + strandat 1826.814 kb on + strandat 1826.814 kb on + strandat 1826.814 kb on + strandat 1826.822 kb on - strandat 1826.859 kb on + strandat 1826.867 kb on - strandat 1826.889 kb on - strandat 1826.926 kb on + strandat 1826.950 kb on - strandat 1826.973 kb on - strandat 1826.978 kb on - strandat 1827.014 kb on + strandat 1827.022 kb on - strandat 1827.060 kb on - strandat 1827.097 kb on + strand, within DVU1764at 1827.156 kb on + strand, within DVU1764at 1827.164 kb on - strand, within DVU1764

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Chloride 62.5 mM
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1,824,922 - -0.2
1,824,987 + -0.3
1,825,017 + DVU1760 0.11 -0.7
1,825,017 + DVU1760 0.11 -0.8
1,825,321 + DVU1760 0.63 -0.3
1,825,475 - DVU1760 0.89 +0.3
1,825,760 + +0.1
1,825,845 - DVU1762 0.13 +0.2
1,825,902 + DVU1762 0.25 +0.1
1,825,951 + DVU1762 0.36 -1.5
1,825,959 - DVU1762 0.38 +1.0
1,825,959 - DVU1762 0.38 +0.2
1,826,132 - DVU1762 0.75 -0.0
1,826,396 - +2.1
1,826,420 + +0.1
1,826,420 + -1.4
1,826,428 - -0.5
1,826,442 + -1.8
1,826,450 - +0.1
1,826,451 - -0.8
1,826,451 - -0.5
1,826,451 - -0.4
1,826,504 - -0.0
1,826,672 - -1.0
1,826,730 + -1.0
1,826,730 + -0.2
1,826,814 + +0.4
1,826,814 + +1.2
1,826,814 + -0.0
1,826,814 + -0.4
1,826,822 - +0.4
1,826,859 + -0.6
1,826,867 - +0.6
1,826,889 - +0.5
1,826,926 + -0.2
1,826,950 - -0.0
1,826,973 - -0.1
1,826,978 - -0.4
1,827,014 + -0.3
1,827,022 - +0.2
1,827,060 - +0.0
1,827,097 + DVU1764 0.22 -0.2
1,827,156 + DVU1764 0.44 -0.5
1,827,164 - DVU1764 0.47 +0.1

Or see this region's nucleotide sequence