Experiment: MoYLS4 with Chloride 125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0087 and DVU0088 overlap by 4 nucleotides DVU0088 and DVU0089 are separated by 55 nucleotides
DVU0087: DVU0087 - conserved domain protein (TIGR), at 111,902 to 112,396
DVU0087
DVU0088: DVU0088 - Sodium/pantothenate symporter (TIGR), at 112,393 to 113,880
DVU0088
DVU0089: DVU0089 - conserved hypothetical protein (TIGR), at 113,936 to 114,739
DVU0089
Position (kb) 112
113
114 Strain fitness (log2 ratio) -2
-1
0
1 at 111.502 kb on + strand at 111.508 kb on - strand at 111.508 kb on - strand at 111.510 kb on - strand at 111.513 kb on + strand at 111.632 kb on + strand at 111.687 kb on + strand at 111.729 kb on + strand at 111.803 kb on + strand at 111.819 kb on + strand at 111.860 kb on + strand at 111.938 kb on - strand at 111.952 kb on - strand, within DVU0087 at 111.965 kb on + strand, within DVU0087 at 112.013 kb on + strand, within DVU0087 at 112.146 kb on - strand, within DVU0087 at 112.241 kb on - strand, within DVU0087 at 112.356 kb on + strand at 112.404 kb on + strand at 112.412 kb on - strand at 112.451 kb on + strand at 112.513 kb on + strand at 112.515 kb on + strand at 112.515 kb on + strand at 112.744 kb on - strand, within DVU0088 at 112.857 kb on + strand, within DVU0088 at 112.964 kb on + strand, within DVU0088 at 113.046 kb on + strand, within DVU0088 at 113.058 kb on + strand, within DVU0088 at 113.162 kb on - strand, within DVU0088 at 113.177 kb on - strand, within DVU0088 at 113.177 kb on - strand, within DVU0088 at 113.285 kb on + strand, within DVU0088 at 113.345 kb on + strand, within DVU0088 at 113.353 kb on - strand, within DVU0088 at 113.490 kb on + strand, within DVU0088 at 113.490 kb on - strand, within DVU0088 at 113.490 kb on - strand, within DVU0088 at 113.492 kb on + strand, within DVU0088 at 113.500 kb on - strand, within DVU0088 at 113.500 kb on - strand, within DVU0088 at 113.500 kb on - strand, within DVU0088 at 113.590 kb on - strand, within DVU0088 at 113.602 kb on + strand, within DVU0088 at 113.796 kb on - strand at 113.837 kb on - strand at 113.867 kb on - strand at 113.867 kb on - strand at 113.910 kb on + strand at 113.922 kb on + strand at 113.941 kb on - strand at 113.954 kb on + strand at 113.955 kb on + strand at 113.963 kb on - strand at 114.092 kb on + strand, within DVU0089 at 114.304 kb on + strand, within DVU0089 at 114.351 kb on - strand, within DVU0089 at 114.405 kb on - strand, within DVU0089 at 114.441 kb on + strand, within DVU0089 at 114.464 kb on + strand, within DVU0089 at 114.508 kb on + strand, within DVU0089 at 114.521 kb on - strand, within DVU0089 at 114.600 kb on + strand, within DVU0089 at 114.600 kb on + strand, within DVU0089 at 114.600 kb on + strand, within DVU0089 at 114.608 kb on - strand, within DVU0089 at 114.720 kb on + strand at 114.848 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Chloride 125 mM remove 111,502 + -0.3 111,508 - +0.6 111,508 - +0.2 111,510 - +0.1 111,513 + -0.5 111,632 + +0.1 111,687 + +0.0 111,729 + -0.1 111,803 + -0.0 111,819 + -0.1 111,860 + -0.0 111,938 - +0.4 111,952 - DVU0087 0.10 +0.4 111,965 + DVU0087 0.13 +0.0 112,013 + DVU0087 0.22 +0.3 112,146 - DVU0087 0.49 +0.2 112,241 - DVU0087 0.68 +0.4 112,356 + -0.4 112,404 + +0.8 112,412 - -0.5 112,451 + -1.5 112,513 + +1.2 112,515 + +0.2 112,515 + +0.0 112,744 - DVU0088 0.24 -0.8 112,857 + DVU0088 0.31 -0.4 112,964 + DVU0088 0.38 -0.2 113,046 + DVU0088 0.44 -0.3 113,058 + DVU0088 0.45 +0.3 113,162 - DVU0088 0.52 -0.2 113,177 - DVU0088 0.53 -0.6 113,177 - DVU0088 0.53 +0.7 113,285 + DVU0088 0.60 +0.3 113,345 + DVU0088 0.64 +0.3 113,353 - DVU0088 0.65 -0.0 113,490 + DVU0088 0.74 -0.2 113,490 - DVU0088 0.74 -0.0 113,490 - DVU0088 0.74 -0.7 113,492 + DVU0088 0.74 -0.0 113,500 - DVU0088 0.74 +0.7 113,500 - DVU0088 0.74 +0.6 113,500 - DVU0088 0.74 +0.1 113,590 - DVU0088 0.80 -0.5 113,602 + DVU0088 0.81 -2.0 113,796 - -1.2 113,837 - +0.5 113,867 - -0.1 113,867 - +0.1 113,910 + -0.3 113,922 + -1.0 113,941 - +0.4 113,954 + -1.4 113,955 + +0.3 113,963 - -0.1 114,092 + DVU0089 0.19 +0.5 114,304 + DVU0089 0.46 -0.4 114,351 - DVU0089 0.52 -2.0 114,405 - DVU0089 0.58 -0.4 114,441 + DVU0089 0.63 +0.1 114,464 + DVU0089 0.66 +0.4 114,508 + DVU0089 0.71 -0.8 114,521 - DVU0089 0.73 +0.5 114,600 + DVU0089 0.83 -0.5 114,600 + DVU0089 0.83 -0.0 114,600 + DVU0089 0.83 -0.1 114,608 - DVU0089 0.84 +0.2 114,720 + -0.1 114,848 + +0.2
Or see this region's nucleotide sequence