Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2144

Experiment: Formate/Acetate-Sulfate (60/30-30 mM) + 0.1% Yeast Extract (FAYS4)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfba and gap-2 are separated by 23 nucleotidesgap-2 and DVU2145 are separated by 324 nucleotides DVU2143: fba - fructose-1,6-bisphosphate aldolase, class II (TIGR), at 2,240,742 to 2,241,665 fba DVU2144: gap-2 - glyceraldehyde 3-phosphate dehydrogenase (TIGR), at 2,241,689 to 2,242,690 gap-2 DVU2145: DVU2145 - chloramphenicol acetyltransferase, putative (TIGR), at 2,243,015 to 2,243,665 DVU2145 Position (kb) 2241 2242 2243Strain fitness (log2 ratio) -1 0 1at 2242.692 kb on - strandat 2242.728 kb on - strandat 2242.783 kb on - strandat 2242.847 kb on - strandat 2242.879 kb on + strandat 2242.927 kb on - strandat 2242.966 kb on + strandat 2242.978 kb on + strandat 2242.986 kb on - strandat 2242.993 kb on - strandat 2243.027 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/30-30 mM) + 0.1% Yeast Extract (FAYS4)
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2,242,692 - +0.7
2,242,728 - +0.1
2,242,783 - +0.3
2,242,847 - -1.5
2,242,879 + +0.0
2,242,927 - +0.5
2,242,966 + +0.4
2,242,978 + -0.1
2,242,986 - -0.0
2,242,993 - +0.0
2,243,027 + -0.0

Or see this region's nucleotide sequence