Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1833

Experiment: Formate/Acetate-Sulfate (60/30-30 mM) + 0.1% Yeast Extract (FAYS4)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDORF37658 and DVU1832 are separated by 353 nucleotidesDVU1832 and ppsA are separated by 339 nucleotidesppsA and pyc are separated by 143 nucleotides DORF37658: DORF37658 - SEED: Magnesium and cobalt efflux protein CorC, at 1,897,098 to 1,897,691 DORF37658 DVU1832: DVU1832 - hypothetical protein (TIGR), at 1,898,045 to 1,898,146 DVU1832 DVU1833: ppsA - phosphoenolpyruvate synthase, putative (TIGR), at 1,898,486 to 1,902,061 ppsA DVU1834: pyc - pyruvate carboxylase, putative (TIGR), at 1,902,205 to 1,905,909 pyc Position (kb) 1898 1899 1900 1901 1902 1903Strain fitness (log2 ratio) -1 0 1at 1897.552 kb on + strand, within DORF37658at 1897.607 kb on - strand, within DORF37658at 1897.719 kb on + strandat 1897.883 kb on + strandat 1897.901 kb on - strandat 1898.233 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/30-30 mM) + 0.1% Yeast Extract (FAYS4)
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1,897,552 + DORF37658 0.76 -0.5
1,897,607 - DORF37658 0.86 -1.2
1,897,719 + -0.5
1,897,883 + +1.5
1,897,901 - -0.2
1,898,233 - -1.7

Or see this region's nucleotide sequence