Experiment: Pyruvate-Sulfate (60-15 mM) + 0.1% Yeast Extract (PyrYS4)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0062 and DVU0063 are separated by 29 nucleotides DVU0063 and DVU0064 are separated by 88 nucleotides DVU0064 and DVU0065 are separated by 251 nucleotides
DVU0062: DVU0062 - RND efflux system, outer membrane protein, NodT family (TIGR), at 73,877 to 75,391
DVU0062
DVU0063: DVU0063 - transcriptional regulator, MarR family (TIGR), at 75,421 to 75,861
DVU0063
DVU0064: DVU0064 - hypothetical protein (TIGR), at 75,950 to 76,858
DVU0064
DVU0065: DVU0065 - hypothetical protein (TIGR), at 77,110 to 77,907
DVU0065
Position (kb) 75
76
77 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 74.994 kb on + strand, within DVU0062 at 75.365 kb on - strand at 75.365 kb on - strand at 75.385 kb on + strand at 75.544 kb on - strand, within DVU0063 at 75.594 kb on + strand, within DVU0063 at 75.602 kb on - strand, within DVU0063 at 75.604 kb on - strand, within DVU0063 at 75.604 kb on - strand, within DVU0063 at 75.711 kb on + strand, within DVU0063 at 75.811 kb on + strand, within DVU0063 at 75.827 kb on + strand at 75.833 kb on - strand at 75.861 kb on + strand at 75.939 kb on - strand at 75.953 kb on - strand at 76.051 kb on + strand, within DVU0064 at 76.210 kb on + strand, within DVU0064 at 76.269 kb on - strand, within DVU0064 at 76.271 kb on + strand, within DVU0064 at 76.313 kb on + strand, within DVU0064 at 76.320 kb on + strand, within DVU0064 at 76.320 kb on + strand, within DVU0064 at 76.366 kb on + strand, within DVU0064 at 76.381 kb on + strand, within DVU0064 at 76.388 kb on + strand, within DVU0064 at 76.468 kb on + strand, within DVU0064 at 76.474 kb on + strand, within DVU0064 at 76.660 kb on + strand, within DVU0064 at 76.675 kb on - strand, within DVU0064 at 76.684 kb on + strand, within DVU0064 at 76.684 kb on + strand, within DVU0064 at 76.699 kb on - strand, within DVU0064 at 76.712 kb on - strand, within DVU0064 at 76.747 kb on + strand, within DVU0064 at 76.868 kb on + strand at 76.913 kb on + strand at 77.038 kb on + strand at 77.095 kb on + strand at 77.116 kb on - strand at 77.143 kb on - strand at 77.143 kb on - strand at 77.223 kb on - strand, within DVU0065 at 77.229 kb on + strand, within DVU0065 at 77.255 kb on + strand, within DVU0065 at 77.257 kb on + strand, within DVU0065 at 77.262 kb on + strand, within DVU0065 at 77.265 kb on - strand, within DVU0065 at 77.265 kb on - strand, within DVU0065 at 77.265 kb on - strand, within DVU0065 at 77.310 kb on - strand, within DVU0065 at 77.383 kb on - strand, within DVU0065 at 77.387 kb on + strand, within DVU0065 at 77.393 kb on - strand, within DVU0065 at 77.395 kb on - strand, within DVU0065 at 77.405 kb on - strand, within DVU0065 at 77.552 kb on + strand, within DVU0065 at 77.565 kb on - strand, within DVU0065 at 77.566 kb on + strand, within DVU0065 at 77.568 kb on - strand, within DVU0065 at 77.616 kb on + strand, within DVU0065 at 77.626 kb on + strand, within DVU0065 at 77.629 kb on - strand, within DVU0065 at 77.639 kb on + strand, within DVU0065 at 77.653 kb on - strand, within DVU0065 at 77.664 kb on + strand, within DVU0065 at 77.665 kb on - strand, within DVU0065 at 77.728 kb on + strand, within DVU0065 at 77.754 kb on + strand, within DVU0065 at 77.797 kb on + strand, within DVU0065 at 77.815 kb on + strand, within DVU0065 at 77.823 kb on - strand, within DVU0065 at 77.844 kb on - strand at 77.851 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15 mM) + 0.1% Yeast Extract (PyrYS4) remove 74,994 + DVU0062 0.74 -0.4 75,365 - +0.8 75,365 - -1.6 75,385 + +0.1 75,544 - DVU0063 0.28 -0.4 75,594 + DVU0063 0.39 -0.3 75,602 - DVU0063 0.41 +1.2 75,604 - DVU0063 0.41 -0.4 75,604 - DVU0063 0.41 -1.5 75,711 + DVU0063 0.66 +0.4 75,811 + DVU0063 0.88 +0.8 75,827 + -0.6 75,833 - +0.2 75,861 + -0.6 75,939 - -1.2 75,953 - +0.2 76,051 + DVU0064 0.11 +1.1 76,210 + DVU0064 0.29 -0.2 76,269 - DVU0064 0.35 +0.2 76,271 + DVU0064 0.35 -0.1 76,313 + DVU0064 0.40 +0.5 76,320 + DVU0064 0.41 -0.2 76,320 + DVU0064 0.41 +0.0 76,366 + DVU0064 0.46 -1.1 76,381 + DVU0064 0.47 -1.8 76,388 + DVU0064 0.48 +0.4 76,468 + DVU0064 0.57 -0.1 76,474 + DVU0064 0.58 +1.0 76,660 + DVU0064 0.78 -0.2 76,675 - DVU0064 0.80 -1.1 76,684 + DVU0064 0.81 +0.0 76,684 + DVU0064 0.81 -0.1 76,699 - DVU0064 0.82 +0.0 76,712 - DVU0064 0.84 -0.2 76,747 + DVU0064 0.88 +0.3 76,868 + -0.3 76,913 + -0.5 77,038 + -0.3 77,095 + +0.0 77,116 - +0.1 77,143 - +0.3 77,143 - +1.3 77,223 - DVU0065 0.14 +0.3 77,229 + DVU0065 0.15 -4.5 77,255 + DVU0065 0.18 -0.3 77,257 + DVU0065 0.18 -0.9 77,262 + DVU0065 0.19 -0.5 77,265 - DVU0065 0.19 -1.3 77,265 - DVU0065 0.19 +2.9 77,265 - DVU0065 0.19 +0.4 77,310 - DVU0065 0.25 -2.6 77,383 - DVU0065 0.34 -0.1 77,387 + DVU0065 0.35 -0.6 77,393 - DVU0065 0.35 +0.0 77,395 - DVU0065 0.36 +0.0 77,405 - DVU0065 0.37 -2.4 77,552 + DVU0065 0.55 +0.2 77,565 - DVU0065 0.57 +0.6 77,566 + DVU0065 0.57 -0.4 77,568 - DVU0065 0.57 -0.3 77,616 + DVU0065 0.63 +0.8 77,626 + DVU0065 0.65 +1.1 77,629 - DVU0065 0.65 -0.8 77,639 + DVU0065 0.66 -0.1 77,653 - DVU0065 0.68 -4.4 77,664 + DVU0065 0.69 -0.4 77,665 - DVU0065 0.70 -0.5 77,728 + DVU0065 0.77 -0.1 77,754 + DVU0065 0.81 +0.1 77,797 + DVU0065 0.86 +0.6 77,815 + DVU0065 0.88 -4.1 77,823 - DVU0065 0.89 +0.1 77,844 - -0.4 77,851 - -3.1
Or see this region's nucleotide sequence