Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3107

Experiment: Pyruvate-Sulfate (60-15 mM) + 0.1% Yeast Extract (PyrYS4)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pyruvate-Sulfate (60-15 mM) + 0.1% Yeast Extract (PyrYS4)
3,254,049	-		DVU3106	0.73	-0.6
3,254,087	+		DVU3106	0.75	+0.2
3,254,108	+		DVU3106	0.76	+0.2
3,254,122	-		DVU3106	0.77	-0.5
3,254,124	-		DVU3106	0.77	+0.1
3,254,136	-		DVU3106	0.78	-0.4
3,254,136	-		DVU3106	0.78	-1.7
3,254,154	+		DVU3106	0.79	+1.2
3,254,167	+		DVU3106	0.80	+0.4
3,254,177	+		DVU3106	0.80	-0.6
3,254,177	+		DVU3106	0.80	-0.3
3,254,177	+		DVU3106	0.80	-1.2
3,254,262	+		DVU3106	0.85	+0.0
3,254,272	+		DVU3106	0.85	+0.2
3,254,272	+		DVU3106	0.85	+0.1
3,254,272	+		DVU3106	0.85	-0.3
3,254,272	+		DVU3106	0.85	-0.5
3,254,272	+		DVU3106	0.85	+0.2
3,254,272	+		DVU3106	0.85	+0.0
3,254,275	-		DVU3106	0.85	-0.2
3,254,277	+		DVU3106	0.85	-1.4
3,254,280	-		DVU3106	0.86	+0.3
3,254,280	-		DVU3106	0.86	-0.2
3,254,280	-		DVU3106	0.86	-0.9
3,254,285	-		DVU3106	0.86	-0.1
3,254,285	-		DVU3106	0.86	-0.8
3,254,285	-		DVU3106	0.86	-0.4
3,254,337	-		DVU3106	0.89	+0.6
3,254,356	+		DVU3106	0.90	-0.1
3,254,369	+				+0.3
3,254,390	-				-1.3
3,254,395	-				+0.0
3,254,401	-				-1.5
3,254,401	-				-0.2
3,254,413	+				+0.2
3,254,421	-				-2.0
3,254,421	-				-0.7
3,254,429	+				+1.7
3,254,439	+				+0.0
3,254,442	-				-1.2
3,254,457	-				-2.9
3,254,478	-				+0.2
3,254,511	+				-0.2
3,254,554	+				+0.8
3,254,562	-				-1.9
3,254,592	+				-3.2
3,254,600	-				+0.6
3,254,701	+				+0.1
3,254,701	+				-0.5
3,254,722	+				-2.3
3,254,741	-				-1.2
3,254,741	-				+0.1
3,254,759	+				-0.3
3,254,767	-				+3.0
3,254,767	-				-0.8
3,254,817	+				+0.8
3,254,817	+				-0.2
3,254,817	+				-0.6
3,254,817	+				+0.0
3,254,817	+				+0.8
3,254,818	-				+0.7
3,254,825	-				-0.5
3,254,825	-				+0.0
3,254,825	-				-1.3
3,254,825	-				-1.2
3,254,825	-				-0.7
3,254,825	-				+0.2
3,254,825	-				+0.1
3,254,827	+				-2.0
3,254,830	+				+0.3
3,254,913	-				+0.5
3,254,997	+				-0.3
3,255,002	+				+0.0
3,255,002	+				-0.4
3,255,005	-				-1.5
3,255,026	+				+0.2
3,255,026	+				+0.1
3,255,027	-				-0.2
3,255,034	-				-0.7
3,255,036	+				-0.3
3,255,044	-				+0.3
3,255,044	-				-0.4
3,255,072	+				+2.0
3,255,075	-				-1.1
3,255,191	+		DVU3107	0.16	-0.7
3,255,216	+		DVU3107	0.18	-0.5
3,255,217	+		DVU3107	0.18	-0.9
3,255,254	+		DVU3107	0.20	-1.5
3,255,256	+		DVU3107	0.20	-0.4
3,255,256	+		DVU3107	0.20	-0.2
3,255,262	-		DVU3107	0.20	-2.6
3,255,299	-		DVU3107	0.22	+0.4
3,255,310	+		DVU3107	0.23	-1.0
3,255,312	-		DVU3107	0.23	-1.4
3,255,418	-		DVU3107	0.29	+1.8
3,255,423	+		DVU3107	0.29	-1.1
3,255,445	+		DVU3107	0.31	+1.1
3,255,566	-		DVU3107	0.38	-1.1
3,255,652	+		DVU3107	0.42	-3.4
3,255,736	-		DVU3107	0.47	-0.5
3,255,782	+		DVU3107	0.50	+0.5
3,255,835	+		DVU3107	0.53	+0.7
3,255,835	+		DVU3107	0.53	+0.1
3,255,835	+		DVU3107	0.53	-0.4
3,255,882	+		DVU3107	0.55	-0.7
3,255,902	+		DVU3107	0.56	+0.2
3,255,911	+		DVU3107	0.57	-0.4
3,255,919	-		DVU3107	0.57	-2.2
3,255,952	+		DVU3107	0.59	-0.7
3,255,977	+		DVU3107	0.61	+0.4
3,255,980	-		DVU3107	0.61	+0.9
3,255,980	-		DVU3107	0.61	-1.4
3,255,987	+		DVU3107	0.61	-0.2
3,255,987	+		DVU3107	0.61	+0.3
3,255,987	+		DVU3107	0.61	-0.1
3,255,995	-		DVU3107	0.62	-0.5
3,256,041	+		DVU3107	0.64	-1.4
3,256,047	-		DVU3107	0.65	-0.9
3,256,049	-		DVU3107	0.65	-0.3
3,256,057	+		DVU3107	0.65	+0.0
3,256,065	-		DVU3107	0.66	-0.1
3,256,065	-		DVU3107	0.66	-0.5
3,256,075	-		DVU3107	0.66	-1.3
3,256,097	+		DVU3107	0.68	+0.4
3,256,151	+		DVU3107	0.71	-0.5
3,256,151	+		DVU3107	0.71	-0.4
3,256,158	+		DVU3107	0.71	-0.2
3,256,159	-		DVU3107	0.71	-0.8
3,256,159	-		DVU3107	0.71	+0.0
3,256,172	+		DVU3107	0.72	+0.0
3,256,185	-		DVU3107	0.72	-2.2
3,256,230	+		DVU3107	0.75	+0.6
3,256,238	-		DVU3107	0.75	+0.1
3,256,238	-		DVU3107	0.75	-0.1
3,256,267	+		DVU3107	0.77	+0.1
3,256,267	+		DVU3107	0.77	-0.5
3,256,272	+		DVU3107	0.77	-1.1
3,256,275	-		DVU3107	0.78	-1.5
3,256,283	+		DVU3107	0.78	+0.2
3,256,342	+		DVU3107	0.81	-0.5
3,256,375	+		DVU3107	0.83	+0.1
3,256,375	+		DVU3107	0.83	-1.2
3,256,413	+		DVU3107	0.85	+0.2
3,256,425	+		DVU3107	0.86	+0.0
3,256,435	+		DVU3107	0.87	-1.5
3,256,440	+		DVU3107	0.87	-0.3
3,256,443	-		DVU3107	0.87	+0.1
3,256,443	-		DVU3107	0.87	-0.3
3,256,443	-		DVU3107	0.87	-0.1
3,256,512	+				-0.9
3,256,514	+				+1.1
3,256,517	+				-4.8
3,256,580	-				-0.7
3,256,604	-				+0.5
3,256,618	+				-1.2
3,256,632	+				-0.1
3,256,637	+				+0.4
3,256,640	-				-0.3
3,256,645	-				+0.3
3,256,645	-				-2.2
3,256,653	+				+0.3
3,256,661	-				+0.8
3,256,682	+				-0.1
3,256,682	+				+0.3
3,256,690	-				-0.0
3,256,701	+				-0.0
3,256,716	+				-0.2
3,256,770	-				-0.5
3,256,779	-				-1.2
3,256,811	+				-1.3
3,256,819	-				-0.3
3,256,848	-				+0.1
3,256,921	-				-5.3
3,256,926	-				-0.4
3,256,980	-	nhaC-2	DVU3108	0.11	-0.3
3,257,011	+	nhaC-2	DVU3108	0.13	-0.9
3,257,028	+	nhaC-2	DVU3108	0.15	-1.4
3,257,044	-	nhaC-2	DVU3108	0.16	-0.3
3,257,048	+	nhaC-2	DVU3108	0.16	-0.6
3,257,049	+	nhaC-2	DVU3108	0.16	-0.3
3,257,049	-	nhaC-2	DVU3108	0.16	-0.2
3,257,049	-	nhaC-2	DVU3108	0.16	-0.8
3,257,075	-	nhaC-2	DVU3108	0.18	+0.5
3,257,107	-	nhaC-2	DVU3108	0.20	-2.0
3,257,147	-	nhaC-2	DVU3108	0.23	-1.6
3,257,191	-	nhaC-2	DVU3108	0.26	-5.0
3,257,207	+	nhaC-2	DVU3108	0.27	-0.1
3,257,220	+	nhaC-2	DVU3108	0.28	-0.7
3,257,220	+	nhaC-2	DVU3108	0.28	-0.9
3,257,220	+	nhaC-2	DVU3108	0.28	-1.4
3,257,228	-	nhaC-2	DVU3108	0.29	-0.8
3,257,228	-	nhaC-2	DVU3108	0.29	+0.5
3,257,228	-	nhaC-2	DVU3108	0.29	-0.9
3,257,228	-	nhaC-2	DVU3108	0.29	+0.5
3,257,230	+	nhaC-2	DVU3108	0.29	+0.5
3,257,236	-	nhaC-2	DVU3108	0.29	-0.6
3,257,275	+	nhaC-2	DVU3108	0.32	-0.0
3,257,275	+	nhaC-2	DVU3108	0.32	+0.6
3,257,283	-	nhaC-2	DVU3108	0.32	-0.5
3,257,283	-	nhaC-2	DVU3108	0.32	-0.6
3,257,299	+	nhaC-2	DVU3108	0.34	-0.8
3,257,307	-	nhaC-2	DVU3108	0.34	-0.2
3,257,307	-	nhaC-2	DVU3108	0.34	-0.5
3,257,307	-	nhaC-2	DVU3108	0.34	-2.1
3,257,361	-	nhaC-2	DVU3108	0.38	-1.9
3,257,361	-	nhaC-2	DVU3108	0.38	-0.0
3,257,386	-	nhaC-2	DVU3108	0.40	-0.7
3,257,391	+	nhaC-2	DVU3108	0.40	-0.9
3,257,416	+	nhaC-2	DVU3108	0.42	-0.7
3,257,428	+	nhaC-2	DVU3108	0.43	+0.1
3,257,501	+	nhaC-2	DVU3108	0.48	-0.8
3,257,561	+	nhaC-2	DVU3108	0.52	+1.4
3,257,561	+	nhaC-2	DVU3108	0.52	-0.3
3,257,576	+	nhaC-2	DVU3108	0.53	+0.8
3,257,584	-	nhaC-2	DVU3108	0.54	+1.4
3,257,584	-	nhaC-2	DVU3108	0.54	-0.4
3,257,609	+	nhaC-2	DVU3108	0.55	-0.7
3,257,609	+	nhaC-2	DVU3108	0.55	+0.1
3,257,617	-	nhaC-2	DVU3108	0.56	-1.1
3,257,617	-	nhaC-2	DVU3108	0.56	-0.5
3,257,617	-	nhaC-2	DVU3108	0.56	-0.1
3,257,617	-	nhaC-2	DVU3108	0.56	-1.8
3,257,617	-	nhaC-2	DVU3108	0.56	-1.6
3,257,617	-	nhaC-2	DVU3108	0.56	+0.3
3,257,617	-	nhaC-2	DVU3108	0.56	-2.2
3,257,626	+	nhaC-2	DVU3108	0.57	-0.5