Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0694

Experiment: Pyruvate-Sulfate (60-15 mM) + 0.1% Yeast Extract (PyrYS4)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0692 and narH are separated by 3 nucleotidesnarH and DVU0694 are separated by 12 nucleotidesDVU0694 and DORF6830 are separated by 15 nucleotides DVU0692: DVU0692 - molybdopterin oxidoreductase, transmembrane subunit, putative (TIGR), at 766,527 to 767,786 DVU0692 DVU0693: narH - molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit, putative (TIGR), containing cytochrome c heme-binding site (VIMSS_AUTO), at 767,790 to 768,557 narH DVU0694: DVU0694 - molybdopterin oxidoreductase, molybdopterin-binding subunit, putative (TIGR), at 768,570 to 770,645 DVU0694 DORF6830: DORF6830 - SEED: FIG00602532: hypothetical protein, at 770,661 to 771,293 DORF6830 Position (kb) 768 769 770 771Strain fitness (log2 ratio) -2 -1 0 1at 767.656 kb on + strand, within DVU0692at 767.696 kb on - strandat 767.778 kb on - strandat 767.794 kb on + strandat 767.939 kb on + strand, within narHat 768.005 kb on + strand, within narHat 768.051 kb on + strand, within narHat 768.066 kb on - strand, within narHat 768.124 kb on - strand, within narHat 768.147 kb on + strand, within narHat 768.154 kb on + strand, within narHat 768.162 kb on - strand, within narHat 768.169 kb on + strand, within narHat 768.310 kb on + strand, within narHat 768.318 kb on - strand, within narHat 768.398 kb on + strand, within narHat 768.411 kb on - strand, within narHat 768.493 kb on - strandat 768.623 kb on - strandat 768.698 kb on + strandat 768.706 kb on - strandat 768.773 kb on - strandat 768.786 kb on - strand, within DVU0694at 768.806 kb on - strand, within DVU0694at 768.837 kb on + strand, within DVU0694at 768.856 kb on + strand, within DVU0694at 768.864 kb on - strand, within DVU0694at 768.864 kb on - strand, within DVU0694at 769.044 kb on + strand, within DVU0694at 769.052 kb on - strand, within DVU0694at 769.136 kb on + strand, within DVU0694at 769.144 kb on - strand, within DVU0694at 769.197 kb on - strand, within DVU0694at 769.253 kb on - strand, within DVU0694at 769.349 kb on + strand, within DVU0694at 769.368 kb on - strand, within DVU0694at 769.409 kb on - strand, within DVU0694at 769.444 kb on + strand, within DVU0694at 769.452 kb on - strand, within DVU0694at 769.520 kb on - strand, within DVU0694at 769.548 kb on - strand, within DVU0694at 769.627 kb on - strand, within DVU0694at 769.675 kb on + strand, within DVU0694at 769.675 kb on + strand, within DVU0694at 769.742 kb on + strand, within DVU0694at 769.806 kb on - strand, within DVU0694at 769.840 kb on - strand, within DVU0694at 769.902 kb on + strand, within DVU0694at 769.946 kb on - strand, within DVU0694at 769.973 kb on - strand, within DVU0694at 770.012 kb on + strand, within DVU0694at 770.020 kb on - strand, within DVU0694at 770.093 kb on - strand, within DVU0694at 770.111 kb on - strand, within DVU0694at 770.133 kb on + strand, within DVU0694at 770.293 kb on - strand, within DVU0694at 770.342 kb on - strand, within DVU0694at 770.427 kb on + strand, within DVU0694at 770.472 kb on - strandat 770.629 kb on + strandat 770.694 kb on - strandat 770.697 kb on + strandat 770.702 kb on + strandat 770.793 kb on + strand, within DORF6830at 770.793 kb on + strand, within DORF6830at 770.924 kb on + strand, within DORF6830at 770.924 kb on + strand, within DORF6830at 771.040 kb on + strand, within DORF6830at 771.077 kb on + strand, within DORF6830at 771.077 kb on + strand, within DORF6830at 771.087 kb on - strand, within DORF6830at 771.187 kb on + strand, within DORF6830at 771.195 kb on - strand, within DORF6830at 771.195 kb on - strand, within DORF6830at 771.296 kb on - strandat 771.297 kb on - strandat 771.318 kb on - strandat 771.504 kb on + strandat 771.534 kb on + strandat 771.564 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15 mM) + 0.1% Yeast Extract (PyrYS4)
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767,656 + DVU0692 0.90 -1.5
767,696 - +0.7
767,778 - -1.2
767,794 + -0.8
767,939 + narH DVU0693 0.19 -1.4
768,005 + narH DVU0693 0.28 -1.2
768,051 + narH DVU0693 0.34 -1.1
768,066 - narH DVU0693 0.36 -0.8
768,124 - narH DVU0693 0.43 -0.9
768,147 + narH DVU0693 0.46 -0.4
768,154 + narH DVU0693 0.47 -0.6
768,162 - narH DVU0693 0.48 -0.5
768,169 + narH DVU0693 0.49 -0.9
768,310 + narH DVU0693 0.68 -1.2
768,318 - narH DVU0693 0.69 -1.4
768,398 + narH DVU0693 0.79 -1.2
768,411 - narH DVU0693 0.81 -0.5
768,493 - -1.7
768,623 - -1.6
768,698 + -0.2
768,706 - -0.9
768,773 - -0.8
768,786 - DVU0694 0.10 -1.4
768,806 - DVU0694 0.11 -1.4
768,837 + DVU0694 0.13 -0.5
768,856 + DVU0694 0.14 -1.1
768,864 - DVU0694 0.14 -0.9
768,864 - DVU0694 0.14 -0.7
769,044 + DVU0694 0.23 -0.9
769,052 - DVU0694 0.23 -1.5
769,136 + DVU0694 0.27 -1.4
769,144 - DVU0694 0.28 -1.2
769,197 - DVU0694 0.30 -1.0
769,253 - DVU0694 0.33 +0.3
769,349 + DVU0694 0.38 -0.3
769,368 - DVU0694 0.38 -0.6
769,409 - DVU0694 0.40 -0.8
769,444 + DVU0694 0.42 -1.6
769,452 - DVU0694 0.42 +0.0
769,520 - DVU0694 0.46 -1.0
769,548 - DVU0694 0.47 -0.8
769,627 - DVU0694 0.51 -0.8
769,675 + DVU0694 0.53 -0.3
769,675 + DVU0694 0.53 -1.5
769,742 + DVU0694 0.56 -1.1
769,806 - DVU0694 0.60 -0.7
769,840 - DVU0694 0.61 -0.1
769,902 + DVU0694 0.64 -1.2
769,946 - DVU0694 0.66 +0.3
769,973 - DVU0694 0.68 -1.0
770,012 + DVU0694 0.69 -1.4
770,020 - DVU0694 0.70 -0.2
770,093 - DVU0694 0.73 -0.4
770,111 - DVU0694 0.74 -0.5
770,133 + DVU0694 0.75 -0.2
770,293 - DVU0694 0.83 -1.5
770,342 - DVU0694 0.85 -1.2
770,427 + DVU0694 0.89 -1.1
770,472 - -0.7
770,629 + -0.1
770,694 - -0.7
770,697 + -0.2
770,702 + -0.6
770,793 + DORF6830 0.21 -1.0
770,793 + DORF6830 0.21 +0.7
770,924 + DORF6830 0.42 -1.4
770,924 + DORF6830 0.42 -1.4
771,040 + DORF6830 0.60 -2.2
771,077 + DORF6830 0.66 -1.1
771,077 + DORF6830 0.66 -1.3
771,087 - DORF6830 0.67 -0.6
771,187 + DORF6830 0.83 -0.9
771,195 - DORF6830 0.84 -1.0
771,195 - DORF6830 0.84 -1.2
771,296 - -0.8
771,297 - -1.5
771,318 - +0.2
771,504 + +1.3
771,534 + +0.0
771,564 + +0.5

Or see this region's nucleotide sequence