Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0238

Experiment: Lactate-Sulfate (60-30 mM) + 0.1% Yeast Extract (MoYLS4)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntserS and DVU0238 are separated by 104 nucleotidesDVU0238 and DVU0240 are separated by 535 nucleotides DVU0237: serS - seryl-tRNA synthetase (TIGR), at 270,666 to 271,940 serS DVU0238: DVU0238 - hypothetical protein (TIGR), at 272,045 to 272,434 DVU0238 DVU0240: DVU0240 - hypothetical protein (TIGR), at 272,970 to 273,377 DVU0240 Position (kb) 272 273Strain fitness (log2 ratio) -2 -1 0 1at 272.016 kb on + strandat 272.022 kb on + strandat 272.164 kb on - strand, within DVU0238at 272.187 kb on + strand, within DVU0238at 272.243 kb on - strand, within DVU0238at 272.299 kb on - strand, within DVU0238at 272.299 kb on - strand, within DVU0238at 272.309 kb on + strand, within DVU0238at 272.383 kb on + strand, within DVU0238at 272.416 kb on + strandat 272.506 kb on - strandat 272.855 kb on + strandat 272.863 kb on - strandat 272.863 kb on - strandat 272.923 kb on + strandat 272.928 kb on + strandat 273.099 kb on - strand, within DVU0240at 273.135 kb on - strand, within DVU0240at 273.181 kb on - strand, within DVU0240at 273.212 kb on + strand, within DVU0240at 273.220 kb on - strand, within DVU0240at 273.268 kb on - strand, within DVU0240at 273.280 kb on - strand, within DVU0240at 273.336 kb on + strand, within DVU0240at 273.351 kb on - strandat 273.421 kb on - strandat 273.433 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactate-Sulfate (60-30 mM) + 0.1% Yeast Extract (MoYLS4)
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272,016 + -0.3
272,022 + +0.2
272,164 - DVU0238 0.31 +0.5
272,187 + DVU0238 0.36 +0.4
272,243 - DVU0238 0.51 +0.2
272,299 - DVU0238 0.65 -0.6
272,299 - DVU0238 0.65 +0.1
272,309 + DVU0238 0.68 -0.5
272,383 + DVU0238 0.87 -0.9
272,416 + -1.1
272,506 - +0.4
272,855 + -1.7
272,863 - -2.3
272,863 - -0.6
272,923 + -0.5
272,928 + -0.3
273,099 - DVU0240 0.32 -0.1
273,135 - DVU0240 0.40 -0.2
273,181 - DVU0240 0.52 -0.1
273,212 + DVU0240 0.59 -0.6
273,220 - DVU0240 0.61 +0.2
273,268 - DVU0240 0.73 +1.0
273,280 - DVU0240 0.76 -0.5
273,336 + DVU0240 0.90 -0.2
273,351 - -0.2
273,421 - -0.4
273,433 - -1.0

Or see this region's nucleotide sequence