Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2801

Experiment: Lactate-Sulfate (60-30 mM) minimal (MoLS4)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU2800 and DVU2801 are separated by 251 nucleotidesDVU2801 and DVU2802 are separated by 247 nucleotides DVU2800: DVU2800 - heavy metal translocating P-type ATPase (TIGR), at 2,901,273 to 2,903,174 DVU2800 DVU2801: DVU2801 - hypothetical protein (TIGR), at 2,903,426 to 2,904,691 DVU2801 DVU2802: DVU2802 - transcriptional regulator, GntR family (TIGR), at 2,904,939 to 2,905,634 DVU2802 Position (kb) 2903 2904 2905Strain fitness (log2 ratio) -1 0 1at 2902.444 kb on + strand, within DVU2800at 2902.444 kb on - strand, within DVU2800at 2902.446 kb on + strand, within DVU2800at 2902.465 kb on + strand, within DVU2800at 2902.473 kb on + strand, within DVU2800at 2902.520 kb on - strand, within DVU2800at 2902.525 kb on - strand, within DVU2800at 2902.616 kb on + strand, within DVU2800at 2902.660 kb on - strand, within DVU2800at 2902.706 kb on + strand, within DVU2800at 2902.756 kb on - strand, within DVU2800at 2902.762 kb on - strand, within DVU2800at 2902.782 kb on + strand, within DVU2800at 2902.782 kb on + strand, within DVU2800at 2902.900 kb on + strand, within DVU2800at 2903.022 kb on + strandat 2903.030 kb on - strandat 2903.146 kb on + strandat 2903.321 kb on + strandat 2903.337 kb on + strandat 2903.368 kb on - strandat 2903.379 kb on + strandat 2903.600 kb on + strand, within DVU2801at 2903.652 kb on + strand, within DVU2801at 2903.823 kb on - strand, within DVU2801at 2903.990 kb on + strand, within DVU2801at 2904.046 kb on - strand, within DVU2801at 2904.051 kb on - strand, within DVU2801at 2904.103 kb on - strand, within DVU2801at 2904.167 kb on + strand, within DVU2801at 2904.241 kb on - strand, within DVU2801at 2904.241 kb on - strand, within DVU2801at 2904.291 kb on + strand, within DVU2801at 2904.333 kb on - strand, within DVU2801at 2904.333 kb on - strand, within DVU2801at 2904.401 kb on - strand, within DVU2801at 2904.444 kb on + strand, within DVU2801at 2904.444 kb on + strand, within DVU2801at 2904.508 kb on - strand, within DVU2801at 2904.537 kb on - strand, within DVU2801at 2904.560 kb on + strand, within DVU2801at 2904.583 kb on - strandat 2904.616 kb on - strandat 2904.620 kb on + strandat 2904.872 kb on - strandat 2905.006 kb on + strandat 2905.014 kb on - strand, within DVU2802at 2905.061 kb on + strand, within DVU2802at 2905.140 kb on - strand, within DVU2802at 2905.140 kb on - strand, within DVU2802at 2905.142 kb on + strand, within DVU2802at 2905.173 kb on + strand, within DVU2802at 2905.181 kb on - strand, within DVU2802at 2905.212 kb on + strand, within DVU2802at 2905.212 kb on + strand, within DVU2802at 2905.227 kb on - strand, within DVU2802at 2905.229 kb on + strand, within DVU2802at 2905.338 kb on - strand, within DVU2802at 2905.368 kb on + strand, within DVU2802at 2905.397 kb on + strand, within DVU2802at 2905.410 kb on - strand, within DVU2802at 2905.476 kb on + strand, within DVU2802at 2905.484 kb on - strand, within DVU2802at 2905.508 kb on + strand, within DVU2802at 2905.508 kb on + strand, within DVU2802at 2905.509 kb on + strand, within DVU2802at 2905.691 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Lactate-Sulfate (60-30 mM) minimal (MoLS4)
remove
2,902,444 + DVU2800 0.62 +0.1
2,902,444 - DVU2800 0.62 -0.5
2,902,446 + DVU2800 0.62 -0.3
2,902,465 + DVU2800 0.63 -0.4
2,902,473 + DVU2800 0.63 +0.0
2,902,520 - DVU2800 0.66 +0.1
2,902,525 - DVU2800 0.66 +0.7
2,902,616 + DVU2800 0.71 -0.1
2,902,660 - DVU2800 0.73 +0.3
2,902,706 + DVU2800 0.75 -0.2
2,902,756 - DVU2800 0.78 -0.6
2,902,762 - DVU2800 0.78 -0.0
2,902,782 + DVU2800 0.79 +0.2
2,902,782 + DVU2800 0.79 -0.3
2,902,900 + DVU2800 0.86 -0.3
2,903,022 + +0.6
2,903,030 - -0.2
2,903,146 + -0.6
2,903,321 + -0.7
2,903,337 + -0.1
2,903,368 - +0.0
2,903,379 + -0.9
2,903,600 + DVU2801 0.14 -0.0
2,903,652 + DVU2801 0.18 -0.6
2,903,823 - DVU2801 0.31 +1.1
2,903,990 + DVU2801 0.45 -0.6
2,904,046 - DVU2801 0.49 -0.8
2,904,051 - DVU2801 0.49 -0.7
2,904,103 - DVU2801 0.53 +0.8
2,904,167 + DVU2801 0.59 -0.9
2,904,241 - DVU2801 0.64 -0.7
2,904,241 - DVU2801 0.64 -0.8
2,904,291 + DVU2801 0.68 -0.8
2,904,333 - DVU2801 0.72 -1.2
2,904,333 - DVU2801 0.72 +0.1
2,904,401 - DVU2801 0.77 -0.7
2,904,444 + DVU2801 0.80 -1.4
2,904,444 + DVU2801 0.80 -0.9
2,904,508 - DVU2801 0.85 -0.7
2,904,537 - DVU2801 0.88 -0.6
2,904,560 + DVU2801 0.90 -1.0
2,904,583 - -0.2
2,904,616 - +0.2
2,904,620 + +0.2
2,904,872 - +0.2
2,905,006 + +1.5
2,905,014 - DVU2802 0.11 -1.0
2,905,061 + DVU2802 0.18 +0.3
2,905,140 - DVU2802 0.29 -0.4
2,905,140 - DVU2802 0.29 -0.7
2,905,142 + DVU2802 0.29 +0.0
2,905,173 + DVU2802 0.34 +0.1
2,905,181 - DVU2802 0.35 -0.0
2,905,212 + DVU2802 0.39 -0.2
2,905,212 + DVU2802 0.39 -0.2
2,905,227 - DVU2802 0.41 -0.0
2,905,229 + DVU2802 0.42 +0.2
2,905,338 - DVU2802 0.57 +0.1
2,905,368 + DVU2802 0.62 -0.1
2,905,397 + DVU2802 0.66 +1.4
2,905,410 - DVU2802 0.68 -1.4
2,905,476 + DVU2802 0.77 +0.4
2,905,484 - DVU2802 0.78 -0.0
2,905,508 + DVU2802 0.82 -0.8
2,905,508 + DVU2802 0.82 +0.1
2,905,509 + DVU2802 0.82 +0.4
2,905,691 - -0.5

Or see this region's nucleotide sequence