Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS24120

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS24110 and ECOLIN_RS24115 are separated by 62 nucleotidesECOLIN_RS24115 and ECOLIN_RS24120 are separated by 10 nucleotidesECOLIN_RS24120 and ECOLIN_RS24125 are separated by 10 nucleotidesECOLIN_RS24125 and ECOLIN_RS24130 overlap by 1 nucleotidesECOLIN_RS24130 and ECOLIN_RS24135 are separated by 62 nucleotidesECOLIN_RS24135 and ECOLIN_RS24140 are separated by 10 nucleotides ECOLIN_RS24110: ECOLIN_RS24110 - cephalosporin-hydrolyzing class C beta-lactamase EC-5, at 4,850,106 to 4,851,239 _RS24110 ECOLIN_RS24115: ECOLIN_RS24115 - fumarate reductase subunit FrdD, at 4,851,302 to 4,851,661 _RS24115 ECOLIN_RS24120: ECOLIN_RS24120 - fumarate reductase subunit FrdC, at 4,851,672 to 4,852,067 _RS24120 ECOLIN_RS24125: ECOLIN_RS24125 - fumarate reductase iron-sulfur protein, at 4,852,078 to 4,852,323 _RS24125 ECOLIN_RS24130: ECOLIN_RS24130 - serine hydrolase, at 4,852,323 to 4,852,523 _RS24130 ECOLIN_RS24135: ECOLIN_RS24135 - fumarate reductase subunit FrdD, at 4,852,586 to 4,852,945 _RS24135 ECOLIN_RS24140: ECOLIN_RS24140 - fumarate reductase subunit FrdC, at 4,852,956 to 4,853,351 _RS24140 Position (kb) 4851 4852 4853Strain fitness (log2 ratio) -1 0 1at 4850.744 kb on - strand, within ECOLIN_RS24110at 4850.858 kb on - strand, within ECOLIN_RS24110at 4850.871 kb on + strand, within ECOLIN_RS24110at 4850.871 kb on + strand, within ECOLIN_RS24110at 4850.871 kb on + strand, within ECOLIN_RS24110at 4850.872 kb on - strand, within ECOLIN_RS24110at 4850.874 kb on + strand, within ECOLIN_RS24110at 4850.874 kb on + strand, within ECOLIN_RS24110at 4850.874 kb on + strand, within ECOLIN_RS24110at 4850.917 kb on + strand, within ECOLIN_RS24110at 4851.006 kb on + strand, within ECOLIN_RS24110at 4851.069 kb on - strand, within ECOLIN_RS24110at 4851.069 kb on - strand, within ECOLIN_RS24110

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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4,850,744 - ECOLIN_RS24110 0.56 -0.6
4,850,858 - ECOLIN_RS24110 0.66 +0.3
4,850,871 + ECOLIN_RS24110 0.67 +0.7
4,850,871 + ECOLIN_RS24110 0.67 -0.9
4,850,871 + ECOLIN_RS24110 0.67 -0.2
4,850,872 - ECOLIN_RS24110 0.68 -0.2
4,850,874 + ECOLIN_RS24110 0.68 -0.1
4,850,874 + ECOLIN_RS24110 0.68 +1.4
4,850,874 + ECOLIN_RS24110 0.68 -0.4
4,850,917 + ECOLIN_RS24110 0.72 -0.2
4,851,006 + ECOLIN_RS24110 0.79 -0.2
4,851,069 - ECOLIN_RS24110 0.85 +0.1
4,851,069 - ECOLIN_RS24110 0.85 +0.3

Or see this region's nucleotide sequence