Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS13350

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS13340 and ECOLIN_RS13345 are separated by 32 nucleotidesECOLIN_RS13345 and ECOLIN_RS13350 are separated by 57 nucleotidesECOLIN_RS13350 and ECOLIN_RS13355 are separated by 55 nucleotidesECOLIN_RS13355 and ECOLIN_RS13360 are separated by 135 nucleotides ECOLIN_RS13340: ECOLIN_RS13340 - putative basic amino acid antiporter YfcC, at 2,671,645 to 2,673,165 _RS13340 ECOLIN_RS13345: ECOLIN_RS13345 - NUDIX hydrolase YfcD, at 2,673,198 to 2,673,740 _RS13345 ECOLIN_RS13350: ECOLIN_RS13350 - phosphodiesterase, at 2,673,798 to 2,674,349 _RS13350 ECOLIN_RS13355: ECOLIN_RS13355 - glutathione transferase, at 2,674,405 to 2,675,049 _RS13355 ECOLIN_RS13360: ECOLIN_RS13360 - GSH-dependent disulfide bond oxidoreductase, at 2,675,185 to 2,675,832 _RS13360 Position (kb) 2673 2674 2675Strain fitness (log2 ratio) -2 -1 0 1at 2673.541 kb on - strand, within ECOLIN_RS13345at 2673.855 kb on - strand, within ECOLIN_RS13350at 2673.855 kb on - strand, within ECOLIN_RS13350at 2674.069 kb on - strand, within ECOLIN_RS13350at 2674.158 kb on - strand, within ECOLIN_RS13350at 2674.380 kb on - strandat 2674.380 kb on - strandat 2674.511 kb on - strand, within ECOLIN_RS13355at 2674.780 kb on - strand, within ECOLIN_RS13355at 2675.144 kb on + strandat 2675.271 kb on - strand, within ECOLIN_RS13360

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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2,673,541 - ECOLIN_RS13345 0.63 -0.6
2,673,855 - ECOLIN_RS13350 0.10 +0.0
2,673,855 - ECOLIN_RS13350 0.10 +0.3
2,674,069 - ECOLIN_RS13350 0.49 +0.2
2,674,158 - ECOLIN_RS13350 0.65 +0.7
2,674,380 - +0.3
2,674,380 - -0.4
2,674,511 - ECOLIN_RS13355 0.16 -0.1
2,674,780 - ECOLIN_RS13355 0.58 -2.4
2,675,144 + +0.3
2,675,271 - ECOLIN_RS13360 0.13 -1.2

Or see this region's nucleotide sequence