Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS12840

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS12835 and ECOLIN_RS12840 overlap by 4 nucleotidesECOLIN_RS12840 and ECOLIN_RS12845 overlap by 4 nucleotidesECOLIN_RS12845 and ECOLIN_RS12850 overlap by 4 nucleotidesECOLIN_RS12850 and ECOLIN_RS12855 are separated by 41 nucleotides ECOLIN_RS12835: ECOLIN_RS12835 - cytochrome c-type biogenesis heme lyase CcmF, at 2,552,524 to 2,554,467 _RS12835 ECOLIN_RS12840: ECOLIN_RS12840 - cytochrome c maturation protein CcmE, at 2,554,464 to 2,554,943 _RS12840 ECOLIN_RS12845: ECOLIN_RS12845 - heme exporter protein CcmD, at 2,554,940 to 2,555,149 _RS12845 ECOLIN_RS12850: ECOLIN_RS12850 - heme exporter protein CcmC, at 2,555,146 to 2,555,883 _RS12850 ECOLIN_RS12855: ECOLIN_RS12855 - heme exporter protein CcmB, at 2,555,925 to 2,556,587 _RS12855 Position (kb) 2554 2555Strain fitness (log2 ratio) -1 0 1at 2553.858 kb on - strand, within ECOLIN_RS12835at 2554.509 kb on - strandat 2555.469 kb on - strand, within ECOLIN_RS12850

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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2,553,858 - ECOLIN_RS12835 0.69 -0.2
2,554,509 - +0.2
2,555,469 - ECOLIN_RS12850 0.44 -0.5

Or see this region's nucleotide sequence