Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS12190 and ECOLIN_RS31520 are separated by 217 nucleotides ECOLIN_RS31520 and ECOLIN_RS31525 are separated by 271 nucleotides ECOLIN_RS31525 and ECOLIN_RS12195 are separated by 278 nucleotides ECOLIN_RS12195 and ECOLIN_RS12200 overlap by 1 nucleotides
ECOLIN_RS12190: ECOLIN_RS12190 - VWA domain-containing protein, at 2,412,238 to 2,412,897
_RS12190
ECOLIN_RS31520: ECOLIN_RS31520 - type I toxin-antitoxin system Ibs family toxin, at 2,413,115 to 2,413,171
_RS31520
ECOLIN_RS31525: ECOLIN_RS31525 - type I toxin-antitoxin system Ibs family toxin, at 2,413,443 to 2,413,499
_RS31525
ECOLIN_RS12195: ECOLIN_RS12195 - multidrug efflux RND transporter subunit MdtA, at 2,413,778 to 2,415,025
_RS12195
ECOLIN_RS12200: ECOLIN_RS12200 - multidrug efflux RND transporter permease subunit MdtB, at 2,415,025 to 2,418,147
_RS12200
Position (kb) 2413
2414
2415
2416 Strain fitness (log2 ratio) -2
-1
0
1 at 2412.920 kb on + strand at 2413.116 kb on + strand at 2413.444 kb on + strand at 2413.444 kb on + strand at 2413.467 kb on + strand, within ECOLIN_RS31525 at 2414.878 kb on + strand, within ECOLIN_RS12195 at 2415.437 kb on - strand, within ECOLIN_RS12200 at 2415.931 kb on - strand, within ECOLIN_RS12200
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 2,412,920 + -0.0 2,413,116 + +0.5 2,413,444 + -0.5 2,413,444 + +0.2 2,413,467 + ECOLIN_RS31525 0.42 -0.1 2,414,878 + ECOLIN_RS12195 0.88 -2.4 2,415,437 - ECOLIN_RS12200 0.13 -0.2 2,415,931 - ECOLIN_RS12200 0.29 +0.5
Or see this region's nucleotide sequence