Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS09640 and ECOLIN_RS09645 are separated by 163 nucleotides ECOLIN_RS09645 and ECOLIN_RS09650 are separated by 132 nucleotides ECOLIN_RS09650 and ECOLIN_RS09655 are separated by 46 nucleotides ECOLIN_RS09655 and ECOLIN_RS09660 are separated by 182 nucleotides
ECOLIN_RS09640: ECOLIN_RS09640 - hexitol phosphatase HxpB, at 1,896,788 to 1,897,456
_RS09640
ECOLIN_RS09645: ECOLIN_RS09645 - metal-dependent hydrolase, at 1,897,620 to 1,898,210
_RS09645
ECOLIN_RS09650: ECOLIN_RS09650 - cystine/sulfocysteine:cation symporter, at 1,898,343 to 1,899,734
_RS09650
ECOLIN_RS09655: ECOLIN_RS09655 - cell division activator CedA, at 1,899,781 to 1,900,044
_RS09655
ECOLIN_RS09660: ECOLIN_RS09660 - catalase HPII, at 1,900,227 to 1,902,488
_RS09660
Position (kb) 1898
1899
1900 Strain fitness (log2 ratio) -1
0
1 at 1898.296 kb on + strand at 1898.383 kb on + strand at 1898.493 kb on + strand, within ECOLIN_RS09650 at 1898.537 kb on + strand, within ECOLIN_RS09650 at 1898.798 kb on + strand, within ECOLIN_RS09650 at 1898.802 kb on + strand, within ECOLIN_RS09650 at 1899.897 kb on - strand, within ECOLIN_RS09655 at 1900.080 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 1,898,296 + -0.4 1,898,383 + -0.9 1,898,493 + ECOLIN_RS09650 0.11 -0.4 1,898,537 + ECOLIN_RS09650 0.14 -0.0 1,898,798 + ECOLIN_RS09650 0.33 -0.1 1,898,802 + ECOLIN_RS09650 0.33 -0.4 1,899,897 - ECOLIN_RS09655 0.44 +0.6 1,900,080 - +0.1
Or see this region's nucleotide sequence