Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS08575

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS08565 and ECOLIN_RS08575 are separated by 361 nucleotidesECOLIN_RS08575 and ECOLIN_RS08580 are separated by 56 nucleotides ECOLIN_RS08565: ECOLIN_RS08565 - glutamate decarboxylase, at 1,684,374 to 1,685,774 _RS08565 ECOLIN_RS08575: ECOLIN_RS08575 - M16 family metallopeptidase, at 1,686,136 to 1,688,919 _RS08575 ECOLIN_RS08580: ECOLIN_RS08580 - TonB-dependent receptor plug domain-containing protein, at 1,688,976 to 1,691,348 _RS08580 Position (kb) 1686 1687 1688 1689Strain fitness (log2 ratio) -1 0 1at 1687.119 kb on + strand, within ECOLIN_RS08575at 1688.190 kb on + strand, within ECOLIN_RS08575at 1688.680 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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1,687,119 + ECOLIN_RS08575 0.35 +0.0
1,688,190 + ECOLIN_RS08575 0.74 -1.2
1,688,680 - +0.3

Or see this region's nucleotide sequence