Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS01445 and ABIE51_RS01450 are separated by 170 nucleotides ABIE51_RS01450 and ABIE51_RS01455 are separated by 100 nucleotides ABIE51_RS01455 and ABIE51_RS01460 are separated by 306 nucleotides
ABIE51_RS01445: ABIE51_RS01445 - TorF family putative porin, at 315,287 to 316,054
_RS01445
ABIE51_RS01450: ABIE51_RS01450 - GNAT family N-acetyltransferase, at 316,225 to 316,689
_RS01450
ABIE51_RS01455: ABIE51_RS01455 - type I glutamate--ammonia ligase, at 316,790 to 318,199
_RS01455
ABIE51_RS01460: ABIE51_RS01460 - undecaprenyl-diphosphate phosphatase, at 318,506 to 319,360
_RS01460
Position (kb) 316
317
318
319 Strain fitness (log2 ratio) -2
-1
0
1 at 315.840 kb on + strand, within ABIE51_RS01445 at 315.840 kb on + strand, within ABIE51_RS01445 at 315.841 kb on - strand, within ABIE51_RS01445 at 315.861 kb on + strand, within ABIE51_RS01445 at 315.921 kb on + strand, within ABIE51_RS01445 at 315.921 kb on + strand, within ABIE51_RS01445 at 315.922 kb on - strand, within ABIE51_RS01445 at 315.922 kb on - strand, within ABIE51_RS01445 at 315.922 kb on - strand, within ABIE51_RS01445 at 316.071 kb on - strand at 316.071 kb on - strand at 316.227 kb on - strand at 316.227 kb on - strand at 316.277 kb on + strand, within ABIE51_RS01450 at 316.277 kb on + strand, within ABIE51_RS01450 at 316.277 kb on + strand, within ABIE51_RS01450 at 316.278 kb on - strand, within ABIE51_RS01450 at 316.319 kb on + strand, within ABIE51_RS01450 at 316.320 kb on - strand, within ABIE51_RS01450 at 316.320 kb on - strand, within ABIE51_RS01450 at 316.380 kb on - strand, within ABIE51_RS01450 at 316.380 kb on - strand, within ABIE51_RS01450 at 316.739 kb on + strand at 318.270 kb on + strand at 318.308 kb on + strand at 318.417 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media remove 315,840 + ABIE51_RS01445 0.72 +0.8 315,840 + ABIE51_RS01445 0.72 -2.1 315,841 - ABIE51_RS01445 0.72 +0.5 315,861 + ABIE51_RS01445 0.75 -0.2 315,921 + ABIE51_RS01445 0.83 -0.2 315,921 + ABIE51_RS01445 0.83 +0.1 315,922 - ABIE51_RS01445 0.83 +0.3 315,922 - ABIE51_RS01445 0.83 -1.1 315,922 - ABIE51_RS01445 0.83 -0.1 316,071 - -0.3 316,071 - -0.0 316,227 - -0.4 316,227 - +1.1 316,277 + ABIE51_RS01450 0.11 -0.3 316,277 + ABIE51_RS01450 0.11 -0.1 316,277 + ABIE51_RS01450 0.11 -0.6 316,278 - ABIE51_RS01450 0.11 -0.4 316,319 + ABIE51_RS01450 0.20 +0.1 316,320 - ABIE51_RS01450 0.20 +0.1 316,320 - ABIE51_RS01450 0.20 +0.3 316,380 - ABIE51_RS01450 0.33 -0.2 316,380 - ABIE51_RS01450 0.33 +0.0 316,739 + +0.9 318,270 + +0.7 318,308 + -0.5 318,417 + -0.8
Or see this region's nucleotide sequence