Experiment: Aerobic; Cadmium acetate 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS02145 and ABCV34_RS02150 are separated by 135 nucleotides ABCV34_RS02150 and ABCV34_RS02155 are separated by 146 nucleotides ABCV34_RS02155 and ABCV34_RS02160 are separated by 4 nucleotides ABCV34_RS02160 and ABCV34_RS02165 are separated by 159 nucleotides
ABCV34_RS02145: ABCV34_RS02145 - DMT family transporter, at 482,210 to 483,124
_RS02145
ABCV34_RS02150: ABCV34_RS02150 - helix-turn-helix domain-containing protein, at 483,260 to 483,934
_RS02150
ABCV34_RS02155: ABCV34_RS02155 - catalase, at 484,081 to 485,517
_RS02155
ABCV34_RS02160: ABCV34_RS02160 - YqiA/YcfP family alpha/beta fold hydrolase, at 485,522 to 486,088
_RS02160
ABCV34_RS02165: ABCV34_RS02165 - GNAT family N-acetyltransferase, at 486,248 to 486,562
_RS02165
Position (kb) 484
485
486 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 483.178 kb on - strand at 483.192 kb on + strand at 483.192 kb on + strand at 483.193 kb on - strand at 483.193 kb on - strand at 483.426 kb on + strand, within ABCV34_RS02150 at 483.426 kb on + strand, within ABCV34_RS02150 at 483.426 kb on + strand, within ABCV34_RS02150 at 483.427 kb on - strand, within ABCV34_RS02150 at 483.563 kb on + strand, within ABCV34_RS02150 at 483.563 kb on + strand, within ABCV34_RS02150 at 483.563 kb on + strand, within ABCV34_RS02150 at 483.563 kb on + strand, within ABCV34_RS02150 at 483.563 kb on + strand, within ABCV34_RS02150 at 483.564 kb on - strand, within ABCV34_RS02150 at 483.564 kb on - strand, within ABCV34_RS02150 at 483.564 kb on - strand, within ABCV34_RS02150 at 483.750 kb on + strand, within ABCV34_RS02150 at 483.750 kb on + strand, within ABCV34_RS02150 at 483.750 kb on + strand, within ABCV34_RS02150 at 483.897 kb on + strand at 483.897 kb on + strand at 483.898 kb on - strand at 483.898 kb on - strand at 483.898 kb on - strand at 483.901 kb on + strand at 483.901 kb on + strand at 483.901 kb on + strand at 483.901 kb on + strand at 483.901 kb on + strand at 483.901 kb on + strand at 483.901 kb on + strand at 483.902 kb on - strand at 483.902 kb on - strand at 483.902 kb on - strand at 483.902 kb on - strand at 483.937 kb on + strand at 483.937 kb on + strand at 483.937 kb on + strand at 483.937 kb on + strand at 483.937 kb on + strand at 483.937 kb on + strand at 483.937 kb on + strand at 483.937 kb on + strand at 483.938 kb on - strand at 483.938 kb on - strand at 483.938 kb on - strand at 483.938 kb on - strand at 483.938 kb on - strand at 483.938 kb on - strand at 483.938 kb on - strand at 483.938 kb on - strand at 483.938 kb on - strand at 483.938 kb on - strand at 483.938 kb on - strand at 483.938 kb on - strand at 483.938 kb on - strand at 483.938 kb on - strand at 483.973 kb on + strand at 484.395 kb on + strand, within ABCV34_RS02155 at 484.420 kb on + strand, within ABCV34_RS02155 at 484.420 kb on + strand, within ABCV34_RS02155 at 484.421 kb on - strand, within ABCV34_RS02155 at 484.421 kb on - strand, within ABCV34_RS02155 at 484.421 kb on - strand, within ABCV34_RS02155 at 484.434 kb on + strand, within ABCV34_RS02155 at 484.434 kb on + strand, within ABCV34_RS02155 at 484.434 kb on + strand, within ABCV34_RS02155 at 484.434 kb on + strand, within ABCV34_RS02155 at 484.435 kb on - strand, within ABCV34_RS02155 at 484.435 kb on - strand, within ABCV34_RS02155 at 484.435 kb on - strand, within ABCV34_RS02155 at 484.435 kb on - strand, within ABCV34_RS02155 at 484.435 kb on - strand, within ABCV34_RS02155 at 484.458 kb on + strand, within ABCV34_RS02155 at 484.458 kb on + strand, within ABCV34_RS02155 at 484.458 kb on + strand, within ABCV34_RS02155 at 484.458 kb on + strand, within ABCV34_RS02155 at 484.459 kb on - strand, within ABCV34_RS02155 at 484.459 kb on - strand, within ABCV34_RS02155 at 484.808 kb on - strand, within ABCV34_RS02155 at 484.808 kb on - strand, within ABCV34_RS02155 at 484.808 kb on - strand, within ABCV34_RS02155 at 484.885 kb on + strand, within ABCV34_RS02155 at 484.885 kb on + strand, within ABCV34_RS02155 at 485.164 kb on + strand, within ABCV34_RS02155 at 485.164 kb on + strand, within ABCV34_RS02155 at 485.164 kb on + strand, within ABCV34_RS02155 at 485.165 kb on - strand, within ABCV34_RS02155 at 485.326 kb on + strand, within ABCV34_RS02155 at 485.326 kb on + strand, within ABCV34_RS02155 at 485.327 kb on - strand, within ABCV34_RS02155 at 485.395 kb on - strand at 485.487 kb on - strand at 485.531 kb on + strand at 485.531 kb on + strand at 485.735 kb on + strand, within ABCV34_RS02160 at 485.735 kb on + strand, within ABCV34_RS02160 at 485.735 kb on + strand, within ABCV34_RS02160 at 485.736 kb on - strand, within ABCV34_RS02160 at 485.736 kb on - strand, within ABCV34_RS02160 at 485.836 kb on + strand, within ABCV34_RS02160 at 485.836 kb on + strand, within ABCV34_RS02160 at 485.836 kb on + strand, within ABCV34_RS02160 at 485.836 kb on + strand, within ABCV34_RS02160 at 485.836 kb on + strand, within ABCV34_RS02160 at 485.836 kb on + strand, within ABCV34_RS02160 at 485.837 kb on - strand, within ABCV34_RS02160 at 485.876 kb on + strand, within ABCV34_RS02160 at 485.876 kb on + strand, within ABCV34_RS02160 at 485.876 kb on + strand, within ABCV34_RS02160 at 485.876 kb on + strand, within ABCV34_RS02160 at 485.876 kb on + strand, within ABCV34_RS02160 at 485.876 kb on + strand, within ABCV34_RS02160 at 485.876 kb on + strand, within ABCV34_RS02160 at 485.876 kb on + strand, within ABCV34_RS02160 at 485.877 kb on - strand, within ABCV34_RS02160 at 485.877 kb on - strand, within ABCV34_RS02160 at 485.877 kb on - strand, within ABCV34_RS02160 at 485.877 kb on - strand, within ABCV34_RS02160 at 485.877 kb on - strand, within ABCV34_RS02160 at 485.877 kb on - strand, within ABCV34_RS02160 at 485.877 kb on - strand, within ABCV34_RS02160 at 485.877 kb on - strand, within ABCV34_RS02160 at 485.877 kb on - strand, within ABCV34_RS02160 at 485.877 kb on - strand, within ABCV34_RS02160 at 486.278 kb on + strand at 486.278 kb on + strand at 486.279 kb on - strand at 486.387 kb on + strand, within ABCV34_RS02165 at 486.387 kb on + strand, within ABCV34_RS02165 at 486.470 kb on + strand, within ABCV34_RS02165 at 486.470 kb on + strand, within ABCV34_RS02165 at 486.471 kb on - strand, within ABCV34_RS02165
Per-strain Table
Position Strand Gene LocusTag Fraction Aerobic; Cadmium acetate 1 remove 483,178 - -1.7 483,192 + -0.2 483,192 + -1.7 483,193 - -1.6 483,193 - -1.7 483,426 + ABCV34_RS02150 0.25 -1.0 483,426 + ABCV34_RS02150 0.25 -0.0 483,426 + ABCV34_RS02150 0.25 -3.1 483,427 - ABCV34_RS02150 0.25 -2.2 483,563 + ABCV34_RS02150 0.45 -1.7 483,563 + ABCV34_RS02150 0.45 -1.2 483,563 + ABCV34_RS02150 0.45 -1.5 483,563 + ABCV34_RS02150 0.45 -3.6 483,563 + ABCV34_RS02150 0.45 -1.3 483,564 - ABCV34_RS02150 0.45 -1.3 483,564 - ABCV34_RS02150 0.45 -2.3 483,564 - ABCV34_RS02150 0.45 -3.2 483,750 + ABCV34_RS02150 0.73 -1.9 483,750 + ABCV34_RS02150 0.73 -2.8 483,750 + ABCV34_RS02150 0.73 -2.3 483,897 + -1.0 483,897 + -0.0 483,898 - -1.9 483,898 - -2.3 483,898 - -1.1 483,901 + -2.5 483,901 + -0.9 483,901 + -2.8 483,901 + -2.5 483,901 + -2.9 483,901 + -1.3 483,901 + -1.7 483,902 - -3.4 483,902 - -1.6 483,902 - -1.3 483,902 - -4.0 483,937 + -0.0 483,937 + -1.0 483,937 + -2.0 483,937 + -1.1 483,937 + -1.2 483,937 + -1.8 483,937 + -1.4 483,937 + -1.4 483,938 - -0.9 483,938 - -1.3 483,938 - -0.8 483,938 - -1.5 483,938 - -1.8 483,938 - -1.8 483,938 - -1.0 483,938 - -1.5 483,938 - -1.7 483,938 - -1.2 483,938 - -0.5 483,938 - -1.2 483,938 - -1.5 483,938 - -1.3 483,973 + -1.4 484,395 + ABCV34_RS02155 0.22 -3.5 484,420 + ABCV34_RS02155 0.24 -2.6 484,420 + ABCV34_RS02155 0.24 -1.9 484,421 - ABCV34_RS02155 0.24 -1.4 484,421 - ABCV34_RS02155 0.24 -1.6 484,421 - ABCV34_RS02155 0.24 -2.1 484,434 + ABCV34_RS02155 0.25 -2.0 484,434 + ABCV34_RS02155 0.25 -1.8 484,434 + ABCV34_RS02155 0.25 -1.1 484,434 + ABCV34_RS02155 0.25 -0.4 484,435 - ABCV34_RS02155 0.25 -2.1 484,435 - ABCV34_RS02155 0.25 -0.8 484,435 - ABCV34_RS02155 0.25 -1.5 484,435 - ABCV34_RS02155 0.25 -1.3 484,435 - ABCV34_RS02155 0.25 -1.8 484,458 + ABCV34_RS02155 0.26 -1.4 484,458 + ABCV34_RS02155 0.26 -1.7 484,458 + ABCV34_RS02155 0.26 -0.9 484,458 + ABCV34_RS02155 0.26 -3.2 484,459 - ABCV34_RS02155 0.26 -0.9 484,459 - ABCV34_RS02155 0.26 -2.3 484,808 - ABCV34_RS02155 0.51 -1.7 484,808 - ABCV34_RS02155 0.51 -2.3 484,808 - ABCV34_RS02155 0.51 -2.6 484,885 + ABCV34_RS02155 0.56 -1.7 484,885 + ABCV34_RS02155 0.56 -1.4 485,164 + ABCV34_RS02155 0.75 -1.7 485,164 + ABCV34_RS02155 0.75 -1.8 485,164 + ABCV34_RS02155 0.75 -0.8 485,165 - ABCV34_RS02155 0.75 -2.1 485,326 + ABCV34_RS02155 0.87 -1.8 485,326 + ABCV34_RS02155 0.87 -2.1 485,327 - ABCV34_RS02155 0.87 -1.7 485,395 - -1.0 485,487 - -1.2 485,531 + -2.1 485,531 + -1.3 485,735 + ABCV34_RS02160 0.38 -1.7 485,735 + ABCV34_RS02160 0.38 -1.3 485,735 + ABCV34_RS02160 0.38 -1.8 485,736 - ABCV34_RS02160 0.38 -2.2 485,736 - ABCV34_RS02160 0.38 -1.2 485,836 + ABCV34_RS02160 0.55 -2.1 485,836 + ABCV34_RS02160 0.55 -1.3 485,836 + ABCV34_RS02160 0.55 -1.4 485,836 + ABCV34_RS02160 0.55 -2.1 485,836 + ABCV34_RS02160 0.55 -1.3 485,836 + ABCV34_RS02160 0.55 -1.5 485,837 - ABCV34_RS02160 0.56 -0.7 485,876 + ABCV34_RS02160 0.62 -0.4 485,876 + ABCV34_RS02160 0.62 -1.5 485,876 + ABCV34_RS02160 0.62 -2.4 485,876 + ABCV34_RS02160 0.62 -0.9 485,876 + ABCV34_RS02160 0.62 -1.9 485,876 + ABCV34_RS02160 0.62 -2.5 485,876 + ABCV34_RS02160 0.62 -2.0 485,876 + ABCV34_RS02160 0.62 -1.7 485,877 - ABCV34_RS02160 0.63 -1.8 485,877 - ABCV34_RS02160 0.63 -1.4 485,877 - ABCV34_RS02160 0.63 -1.0 485,877 - ABCV34_RS02160 0.63 -1.8 485,877 - ABCV34_RS02160 0.63 -4.6 485,877 - ABCV34_RS02160 0.63 -3.3 485,877 - ABCV34_RS02160 0.63 -2.1 485,877 - ABCV34_RS02160 0.63 -1.2 485,877 - ABCV34_RS02160 0.63 -1.0 485,877 - ABCV34_RS02160 0.63 -1.3 486,278 + -2.2 486,278 + -1.6 486,279 - -1.5 486,387 + ABCV34_RS02165 0.44 +0.2 486,387 + ABCV34_RS02165 0.44 -1.8 486,470 + ABCV34_RS02165 0.70 -1.2 486,470 + ABCV34_RS02165 0.70 -1.4 486,471 - ABCV34_RS02165 0.71 -1.6
Or see this region's nucleotide sequence