Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS03620

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS03615 and ABIE51_RS03620 are separated by 53 nucleotidesABIE51_RS03620 and ABIE51_RS03625 overlap by 83 nucleotides ABIE51_RS03615: ABIE51_RS03615 - xylose isomerase, at 790,876 to 792,207 _RS03615 ABIE51_RS03620: ABIE51_RS03620 - hypothetical protein, at 792,261 to 792,551 _RS03620 ABIE51_RS03625: ABIE51_RS03625 - sugar porter family MFS transporter, at 792,469 to 793,899 _RS03625 Position (kb) 792 793Strain fitness (log2 ratio) -1 0 1at 791.342 kb on - strand, within ABIE51_RS03615at 791.473 kb on + strand, within ABIE51_RS03615at 791.473 kb on + strand, within ABIE51_RS03615at 791.548 kb on + strand, within ABIE51_RS03615at 791.576 kb on - strand, within ABIE51_RS03615at 791.576 kb on - strand, within ABIE51_RS03615at 791.578 kb on + strand, within ABIE51_RS03615at 791.578 kb on + strand, within ABIE51_RS03615at 791.620 kb on + strand, within ABIE51_RS03615at 791.840 kb on - strand, within ABIE51_RS03615at 792.049 kb on + strand, within ABIE51_RS03615at 792.349 kb on - strand, within ABIE51_RS03620at 792.869 kb on - strand, within ABIE51_RS03625at 793.108 kb on + strand, within ABIE51_RS03625at 793.342 kb on + strand, within ABIE51_RS03625at 793.342 kb on + strand, within ABIE51_RS03625at 793.342 kb on + strand, within ABIE51_RS03625at 793.343 kb on - strand, within ABIE51_RS03625at 793.343 kb on - strand, within ABIE51_RS03625at 793.343 kb on - strand, within ABIE51_RS03625

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
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791,342 - ABIE51_RS03615 0.35 +0.1
791,473 + ABIE51_RS03615 0.45 +0.5
791,473 + ABIE51_RS03615 0.45 +0.3
791,548 + ABIE51_RS03615 0.50 -1.2
791,576 - ABIE51_RS03615 0.53 +0.3
791,576 - ABIE51_RS03615 0.53 +0.2
791,578 + ABIE51_RS03615 0.53 +0.3
791,578 + ABIE51_RS03615 0.53 -1.0
791,620 + ABIE51_RS03615 0.56 -0.5
791,840 - ABIE51_RS03615 0.72 -0.1
792,049 + ABIE51_RS03615 0.88 +0.5
792,349 - ABIE51_RS03620 0.30 +0.2
792,869 - ABIE51_RS03625 0.28 +0.6
793,108 + ABIE51_RS03625 0.45 +0.0
793,342 + ABIE51_RS03625 0.61 +0.4
793,342 + ABIE51_RS03625 0.61 -0.9
793,342 + ABIE51_RS03625 0.61 +0.1
793,343 - ABIE51_RS03625 0.61 -0.3
793,343 - ABIE51_RS03625 0.61 +0.1
793,343 - ABIE51_RS03625 0.61 +0.4

Or see this region's nucleotide sequence