Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS06455

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS06445 and ABIE51_RS06450 are separated by 18 nucleotidesABIE51_RS06450 and ABIE51_RS06455 overlap by 4 nucleotidesABIE51_RS06455 and ABIE51_RS06460 overlap by 4 nucleotidesABIE51_RS06460 and ABIE51_RS06465 overlap by 4 nucleotidesABIE51_RS06465 and ABIE51_RS06470 overlap by 4 nucleotides ABIE51_RS06445: ABIE51_RS06445 - phosphopyruvate hydratase, at 1,377,513 to 1,378,799 _RS06445 ABIE51_RS06450: ABIE51_RS06450 - cell division protein FtsB, at 1,378,818 to 1,379,162 _RS06450 ABIE51_RS06455: ABIE51_RS06455 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 1,379,159 to 1,379,872 _RS06455 ABIE51_RS06460: ABIE51_RS06460 - hypothetical protein, at 1,379,869 to 1,380,315 _RS06460 ABIE51_RS06465: ABIE51_RS06465 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 1,380,312 to 1,380,791 _RS06465 ABIE51_RS06470: ABIE51_RS06470 - tRNA pseudouridine(13) synthase TruD, at 1,380,788 to 1,381,840 _RS06470 Position (kb) 1379 1380Strain fitness (log2 ratio) -1 0 1at 1379.917 kb on - strand, within ABIE51_RS06460

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
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1,379,917 - ABIE51_RS06460 0.11 +0.6

Or see this region's nucleotide sequence