Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS03230 and ABIE51_RS03235 are separated by 797 nucleotides ABIE51_RS03235 and ABIE51_RS03240 overlap by 4 nucleotides ABIE51_RS03240 and ABIE51_RS03245 are separated by 228 nucleotides
ABIE51_RS03230: ABIE51_RS03230 - efflux RND transporter periplasmic adaptor subunit, at 714,944 to 716,197
_RS03230
ABIE51_RS03235: ABIE51_RS03235 - leucyl aminopeptidase family protein, at 716,995 to 718,374
_RS03235
ABIE51_RS03240: ABIE51_RS03240 - HAD-IA family hydrolase, at 718,371 to 719,087
_RS03240
ABIE51_RS03245: ABIE51_RS03245 - AI-2E family transporter, at 719,316 to 720,449
_RS03245
Position (kb) 716
717
718
719 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 716.159 kb on + strand at 716.160 kb on - strand at 716.268 kb on - strand at 716.298 kb on + strand at 716.298 kb on + strand at 716.299 kb on - strand at 716.338 kb on + strand at 716.338 kb on + strand at 716.338 kb on + strand at 716.338 kb on + strand at 716.339 kb on - strand at 716.378 kb on + strand at 716.379 kb on - strand at 716.609 kb on + strand at 716.609 kb on + strand at 716.609 kb on + strand at 716.610 kb on - strand at 716.610 kb on - strand at 716.858 kb on + strand at 716.858 kb on + strand at 716.858 kb on + strand at 716.858 kb on + strand at 716.858 kb on + strand at 716.858 kb on + strand at 716.858 kb on + strand at 716.858 kb on + strand at 716.858 kb on + strand at 716.858 kb on + strand at 716.858 kb on + strand at 716.859 kb on - strand at 717.026 kb on + strand at 717.095 kb on + strand at 717.095 kb on + strand at 717.095 kb on + strand at 717.095 kb on + strand at 717.096 kb on - strand at 717.096 kb on - strand at 717.096 kb on - strand at 717.096 kb on - strand at 717.147 kb on - strand, within ABIE51_RS03235 at 717.147 kb on - strand, within ABIE51_RS03235 at 717.222 kb on - strand, within ABIE51_RS03235 at 717.222 kb on - strand, within ABIE51_RS03235 at 717.230 kb on + strand, within ABIE51_RS03235 at 717.320 kb on + strand, within ABIE51_RS03235 at 717.413 kb on + strand, within ABIE51_RS03235 at 717.413 kb on + strand, within ABIE51_RS03235 at 717.413 kb on + strand, within ABIE51_RS03235 at 717.413 kb on + strand, within ABIE51_RS03235 at 717.413 kb on + strand, within ABIE51_RS03235 at 717.413 kb on + strand, within ABIE51_RS03235 at 717.413 kb on + strand, within ABIE51_RS03235 at 717.414 kb on - strand, within ABIE51_RS03235 at 717.414 kb on - strand, within ABIE51_RS03235 at 718.034 kb on + strand, within ABIE51_RS03235 at 718.035 kb on - strand, within ABIE51_RS03235 at 718.124 kb on + strand, within ABIE51_RS03235 at 718.139 kb on + strand, within ABIE51_RS03235 at 718.140 kb on - strand, within ABIE51_RS03235 at 718.140 kb on - strand, within ABIE51_RS03235 at 718.768 kb on + strand, within ABIE51_RS03240 at 718.768 kb on + strand, within ABIE51_RS03240 at 718.768 kb on + strand, within ABIE51_RS03240 at 718.768 kb on + strand, within ABIE51_RS03240 at 718.795 kb on + strand, within ABIE51_RS03240 at 718.796 kb on - strand, within ABIE51_RS03240 at 718.796 kb on - strand, within ABIE51_RS03240 at 718.915 kb on + strand, within ABIE51_RS03240 at 718.915 kb on + strand, within ABIE51_RS03240 at 718.915 kb on + strand, within ABIE51_RS03240 at 718.915 kb on + strand, within ABIE51_RS03240 at 718.915 kb on + strand, within ABIE51_RS03240 at 718.915 kb on + strand, within ABIE51_RS03240 at 718.915 kb on + strand, within ABIE51_RS03240 at 718.915 kb on + strand, within ABIE51_RS03240 at 718.915 kb on + strand, within ABIE51_RS03240 at 718.915 kb on + strand, within ABIE51_RS03240 at 718.915 kb on + strand, within ABIE51_RS03240 at 718.916 kb on - strand, within ABIE51_RS03240 at 718.916 kb on - strand, within ABIE51_RS03240 at 718.916 kb on - strand, within ABIE51_RS03240 at 718.916 kb on - strand, within ABIE51_RS03240 at 718.916 kb on - strand, within ABIE51_RS03240 at 718.916 kb on - strand, within ABIE51_RS03240 at 719.099 kb on - strand at 719.168 kb on + strand at 719.168 kb on + strand at 719.246 kb on + strand at 719.246 kb on + strand at 719.246 kb on + strand at 719.246 kb on + strand at 719.247 kb on - strand at 719.247 kb on - strand at 719.247 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media remove 716,159 + -0.9 716,160 - +0.3 716,268 - -0.3 716,298 + +0.2 716,298 + -0.1 716,299 - -0.6 716,338 + -0.7 716,338 + -0.7 716,338 + -0.2 716,338 + +3.2 716,339 - +0.1 716,378 + +0.1 716,379 - -1.0 716,609 + +1.6 716,609 + +0.1 716,609 + -0.5 716,610 - +0.4 716,610 - +0.3 716,858 + -1.3 716,858 + +0.5 716,858 + +0.5 716,858 + -0.3 716,858 + +0.9 716,858 + -0.4 716,858 + +0.8 716,858 + +0.0 716,858 + -0.4 716,858 + +0.2 716,858 + +0.1 716,859 - -0.5 717,026 + -2.4 717,095 + -0.6 717,095 + -0.5 717,095 + -0.7 717,095 + -0.3 717,096 - -0.7 717,096 - -0.3 717,096 - -0.2 717,096 - -0.0 717,147 - ABIE51_RS03235 0.11 -0.3 717,147 - ABIE51_RS03235 0.11 -0.4 717,222 - ABIE51_RS03235 0.16 +0.2 717,222 - ABIE51_RS03235 0.16 +0.1 717,230 + ABIE51_RS03235 0.17 -0.1 717,320 + ABIE51_RS03235 0.24 +0.2 717,413 + ABIE51_RS03235 0.30 +0.2 717,413 + ABIE51_RS03235 0.30 -0.9 717,413 + ABIE51_RS03235 0.30 -0.4 717,413 + ABIE51_RS03235 0.30 +0.1 717,413 + ABIE51_RS03235 0.30 -1.0 717,413 + ABIE51_RS03235 0.30 +0.1 717,413 + ABIE51_RS03235 0.30 -0.4 717,414 - ABIE51_RS03235 0.30 -0.4 717,414 - ABIE51_RS03235 0.30 -0.2 718,034 + ABIE51_RS03235 0.75 -0.8 718,035 - ABIE51_RS03235 0.75 -0.2 718,124 + ABIE51_RS03235 0.82 +0.5 718,139 + ABIE51_RS03235 0.83 -0.6 718,140 - ABIE51_RS03235 0.83 -0.7 718,140 - ABIE51_RS03235 0.83 +3.4 718,768 + ABIE51_RS03240 0.55 -0.1 718,768 + ABIE51_RS03240 0.55 -0.2 718,768 + ABIE51_RS03240 0.55 -0.0 718,768 + ABIE51_RS03240 0.55 -0.3 718,795 + ABIE51_RS03240 0.59 +0.1 718,796 - ABIE51_RS03240 0.59 +0.1 718,796 - ABIE51_RS03240 0.59 +0.4 718,915 + ABIE51_RS03240 0.76 -0.2 718,915 + ABIE51_RS03240 0.76 +0.0 718,915 + ABIE51_RS03240 0.76 +1.2 718,915 + ABIE51_RS03240 0.76 -0.0 718,915 + ABIE51_RS03240 0.76 +0.7 718,915 + ABIE51_RS03240 0.76 +0.2 718,915 + ABIE51_RS03240 0.76 -0.3 718,915 + ABIE51_RS03240 0.76 +0.2 718,915 + ABIE51_RS03240 0.76 -0.2 718,915 + ABIE51_RS03240 0.76 +0.4 718,915 + ABIE51_RS03240 0.76 -0.2 718,916 - ABIE51_RS03240 0.76 +0.0 718,916 - ABIE51_RS03240 0.76 -0.1 718,916 - ABIE51_RS03240 0.76 -0.1 718,916 - ABIE51_RS03240 0.76 -0.0 718,916 - ABIE51_RS03240 0.76 +0.6 718,916 - ABIE51_RS03240 0.76 -0.0 719,099 - -0.3 719,168 + +0.5 719,168 + +0.3 719,246 + -0.5 719,246 + -1.0 719,246 + -0.7 719,246 + -0.3 719,247 - -0.4 719,247 - -0.7 719,247 - +0.4
Or see this region's nucleotide sequence