Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS11005

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE51_RS11000 and ABIE51_RS11005 are separated by 81 nucleotidesABIE51_RS11005 and ABIE51_RS11010 are separated by 74 nucleotides ABIE51_RS11000: ABIE51_RS11000 - alpha/beta-hydrolase family protein, at 2,388,947 to 2,390,680 _RS11000 ABIE51_RS11005: ABIE51_RS11005 - AraC family transcriptional regulator, at 2,390,762 to 2,391,757 _RS11005 ABIE51_RS11010: ABIE51_RS11010 - MFS transporter, at 2,391,832 to 2,393,061 _RS11010 Position (kb) 2390 2391 2392Strain fitness (log2 ratio) -1 0 1at 2390.383 kb on - strand, within ABIE51_RS11000at 2390.411 kb on - strand, within ABIE51_RS11000at 2390.439 kb on + strand, within ABIE51_RS11000at 2390.439 kb on + strand, within ABIE51_RS11000at 2390.719 kb on - strandat 2390.719 kb on - strandat 2390.719 kb on - strandat 2391.655 kb on - strand, within ABIE51_RS11005at 2391.791 kb on + strandat 2391.791 kb on + strandat 2391.791 kb on + strandat 2391.791 kb on + strandat 2391.792 kb on - strandat 2392.304 kb on + strand, within ABIE51_RS11010at 2392.558 kb on + strand, within ABIE51_RS11010at 2392.559 kb on - strand, within ABIE51_RS11010at 2392.559 kb on - strand, within ABIE51_RS11010at 2392.627 kb on + strand, within ABIE51_RS11010

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
remove
2,390,383 - ABIE51_RS11000 0.83 +0.5
2,390,411 - ABIE51_RS11000 0.84 +0.2
2,390,439 + ABIE51_RS11000 0.86 +0.2
2,390,439 + ABIE51_RS11000 0.86 +0.0
2,390,719 - +0.6
2,390,719 - +0.4
2,390,719 - -0.2
2,391,655 - ABIE51_RS11005 0.90 +0.3
2,391,791 + +1.2
2,391,791 + -0.3
2,391,791 + +1.0
2,391,791 + +0.1
2,391,792 - -0.0
2,392,304 + ABIE51_RS11010 0.38 +0.2
2,392,558 + ABIE51_RS11010 0.59 -0.2
2,392,559 - ABIE51_RS11010 0.59 -0.1
2,392,559 - ABIE51_RS11010 0.59 +0.7
2,392,627 + ABIE51_RS11010 0.65 +0.4

Or see this region's nucleotide sequence