Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS06770

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE51_RS06765 and ABIE51_RS06770 are separated by 166 nucleotidesABIE51_RS06770 and ABIE51_RS06775 are separated by 1 nucleotidesABIE51_RS06775 and ABIE51_RS06780 are separated by 140 nucleotides ABIE51_RS06765: ABIE51_RS06765 - energy transducer TonB, at 1,448,265 to 1,448,939 _RS06765 ABIE51_RS06770: ABIE51_RS06770 - hypothetical protein, at 1,449,106 to 1,449,300 _RS06770 ABIE51_RS06775: ABIE51_RS06775 - SIMPL domain-containing protein, at 1,449,302 to 1,450,051 _RS06775 ABIE51_RS06780: ABIE51_RS06780 - Maf family nucleotide pyrophosphatase, at 1,450,192 to 1,450,815 _RS06780 Position (kb) 1449 1450Strain fitness (log2 ratio) -1 0 1at 1448.249 kb on + strandat 1448.250 kb on - strandat 1448.250 kb on - strandat 1448.267 kb on - strandat 1448.405 kb on + strand, within ABIE51_RS06765at 1449.092 kb on - strandat 1449.237 kb on - strand, within ABIE51_RS06770at 1449.489 kb on + strand, within ABIE51_RS06775at 1449.489 kb on + strand, within ABIE51_RS06775at 1449.489 kb on + strand, within ABIE51_RS06775at 1449.489 kb on + strand, within ABIE51_RS06775at 1449.489 kb on + strand, within ABIE51_RS06775at 1449.489 kb on + strand, within ABIE51_RS06775at 1449.490 kb on - strand, within ABIE51_RS06775at 1449.490 kb on - strand, within ABIE51_RS06775at 1449.490 kb on - strand, within ABIE51_RS06775at 1449.490 kb on - strand, within ABIE51_RS06775at 1449.490 kb on - strand, within ABIE51_RS06775at 1449.490 kb on - strand, within ABIE51_RS06775at 1449.490 kb on - strand, within ABIE51_RS06775at 1449.490 kb on - strand, within ABIE51_RS06775at 1449.490 kb on - strand, within ABIE51_RS06775at 1449.490 kb on - strand, within ABIE51_RS06775at 1449.490 kb on - strand, within ABIE51_RS06775at 1449.490 kb on - strand, within ABIE51_RS06775at 1449.559 kb on + strand, within ABIE51_RS06775at 1449.559 kb on + strand, within ABIE51_RS06775at 1449.559 kb on + strand, within ABIE51_RS06775at 1449.559 kb on + strand, within ABIE51_RS06775at 1449.559 kb on + strand, within ABIE51_RS06775at 1449.559 kb on + strand, within ABIE51_RS06775at 1449.559 kb on + strand, within ABIE51_RS06775at 1449.559 kb on + strand, within ABIE51_RS06775at 1449.559 kb on + strand, within ABIE51_RS06775at 1449.559 kb on + strand, within ABIE51_RS06775at 1449.559 kb on + strand, within ABIE51_RS06775at 1449.559 kb on + strand, within ABIE51_RS06775at 1449.559 kb on + strand, within ABIE51_RS06775at 1449.560 kb on - strand, within ABIE51_RS06775at 1449.560 kb on - strand, within ABIE51_RS06775at 1449.560 kb on - strand, within ABIE51_RS06775at 1449.560 kb on - strand, within ABIE51_RS06775at 1449.560 kb on - strand, within ABIE51_RS06775at 1449.560 kb on - strand, within ABIE51_RS06775at 1449.717 kb on + strand, within ABIE51_RS06775at 1449.717 kb on + strand, within ABIE51_RS06775at 1449.723 kb on + strand, within ABIE51_RS06775at 1449.948 kb on + strand, within ABIE51_RS06775at 1449.948 kb on + strand, within ABIE51_RS06775at 1449.949 kb on - strand, within ABIE51_RS06775at 1449.949 kb on - strand, within ABIE51_RS06775at 1450.179 kb on + strandat 1450.179 kb on + strandat 1450.179 kb on + strandat 1450.180 kb on - strandat 1450.198 kb on + strandat 1450.198 kb on + strandat 1450.198 kb on + strandat 1450.199 kb on - strandat 1450.199 kb on - strandat 1450.199 kb on - strandat 1450.199 kb on - strandat 1450.199 kb on - strandat 1450.199 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A_HEPES media
remove
1,448,249 + -0.6
1,448,250 - -1.2
1,448,250 - -0.3
1,448,267 - -0.8
1,448,405 + ABIE51_RS06765 0.21 +0.2
1,449,092 - +0.2
1,449,237 - ABIE51_RS06770 0.67 +0.3
1,449,489 + ABIE51_RS06775 0.25 +0.0
1,449,489 + ABIE51_RS06775 0.25 -0.0
1,449,489 + ABIE51_RS06775 0.25 +0.5
1,449,489 + ABIE51_RS06775 0.25 -0.8
1,449,489 + ABIE51_RS06775 0.25 +0.7
1,449,489 + ABIE51_RS06775 0.25 +1.0
1,449,490 - ABIE51_RS06775 0.25 +0.8
1,449,490 - ABIE51_RS06775 0.25 +0.5
1,449,490 - ABIE51_RS06775 0.25 -0.4
1,449,490 - ABIE51_RS06775 0.25 +0.1
1,449,490 - ABIE51_RS06775 0.25 +0.5
1,449,490 - ABIE51_RS06775 0.25 +0.1
1,449,490 - ABIE51_RS06775 0.25 -0.0
1,449,490 - ABIE51_RS06775 0.25 +0.0
1,449,490 - ABIE51_RS06775 0.25 +0.2
1,449,490 - ABIE51_RS06775 0.25 -0.4
1,449,490 - ABIE51_RS06775 0.25 -0.1
1,449,490 - ABIE51_RS06775 0.25 -0.2
1,449,559 + ABIE51_RS06775 0.34 -0.2
1,449,559 + ABIE51_RS06775 0.34 -0.8
1,449,559 + ABIE51_RS06775 0.34 -0.3
1,449,559 + ABIE51_RS06775 0.34 -0.1
1,449,559 + ABIE51_RS06775 0.34 -0.0
1,449,559 + ABIE51_RS06775 0.34 -1.2
1,449,559 + ABIE51_RS06775 0.34 -0.1
1,449,559 + ABIE51_RS06775 0.34 -1.1
1,449,559 + ABIE51_RS06775 0.34 -0.2
1,449,559 + ABIE51_RS06775 0.34 -0.8
1,449,559 + ABIE51_RS06775 0.34 +0.9
1,449,559 + ABIE51_RS06775 0.34 +0.6
1,449,559 + ABIE51_RS06775 0.34 +0.5
1,449,560 - ABIE51_RS06775 0.34 +0.3
1,449,560 - ABIE51_RS06775 0.34 +0.3
1,449,560 - ABIE51_RS06775 0.34 -0.8
1,449,560 - ABIE51_RS06775 0.34 +0.2
1,449,560 - ABIE51_RS06775 0.34 -0.5
1,449,560 - ABIE51_RS06775 0.34 +0.0
1,449,717 + ABIE51_RS06775 0.55 -0.0
1,449,717 + ABIE51_RS06775 0.55 +0.8
1,449,723 + ABIE51_RS06775 0.56 -0.1
1,449,948 + ABIE51_RS06775 0.86 +0.3
1,449,948 + ABIE51_RS06775 0.86 -0.4
1,449,949 - ABIE51_RS06775 0.86 -0.4
1,449,949 - ABIE51_RS06775 0.86 -0.8
1,450,179 + -0.3
1,450,179 + +0.6
1,450,179 + -0.4
1,450,180 - +1.0
1,450,198 + -0.2
1,450,198 + -0.2
1,450,198 + +0.0
1,450,199 - +0.1
1,450,199 - +0.3
1,450,199 - -1.0
1,450,199 - -0.1
1,450,199 - -0.6
1,450,199 - +0.0

Or see this region's nucleotide sequence