Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS14505

Experiment: Aerobic; copper (II) chloride 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABCV34_RS14495 and ABCV34_RS14500 are separated by 1 nucleotidesABCV34_RS14500 and ABCV34_RS14505 are separated by 128 nucleotidesABCV34_RS14505 and ABCV34_RS14510 are separated by 55 nucleotides ABCV34_RS14495: ABCV34_RS14495 - D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase, at 3,071,750 to 3,072,238 _RS14495 ABCV34_RS14500: ABCV34_RS14500 - protein-L-isoaspartate O-methyltransferase, at 3,072,240 to 3,072,920 _RS14500 ABCV34_RS14505: ABCV34_RS14505 - bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 3,073,049 to 3,073,870 _RS14505 ABCV34_RS14510: ABCV34_RS14510 - thiazole synthase, at 3,073,926 to 3,074,729 _RS14510 Position (kb) 3073 3074Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3072.228 kb on + strandat 3072.228 kb on + strandat 3072.228 kb on + strandat 3072.228 kb on + strandat 3072.228 kb on + strandat 3072.228 kb on + strandat 3072.248 kb on + strandat 3072.248 kb on + strandat 3072.249 kb on - strandat 3072.956 kb on + strandat 3072.956 kb on + strandat 3072.956 kb on + strandat 3072.957 kb on - strandat 3072.957 kb on - strandat 3072.957 kb on - strandat 3072.957 kb on - strandat 3073.051 kb on - strandat 3073.051 kb on - strandat 3073.051 kb on - strandat 3073.859 kb on - strandat 3074.791 kb on + strandat 3074.792 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aerobic; copper (II) chloride 1
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3,072,228 + -0.9
3,072,228 + -2.2
3,072,228 + -1.5
3,072,228 + -1.3
3,072,228 + -1.8
3,072,228 + -1.3
3,072,248 + -3.2
3,072,248 + -1.6
3,072,249 - -1.6
3,072,956 + -1.6
3,072,956 + -1.3
3,072,956 + -1.3
3,072,957 - -2.1
3,072,957 - -2.0
3,072,957 - +0.6
3,072,957 - -1.3
3,073,051 - -1.8
3,073,051 - -1.3
3,073,051 - -1.8
3,073,859 - -1.5
3,074,791 + +2.0
3,074,792 - -1.1

Or see this region's nucleotide sequence