Experiment: Aerobic; copper (II) chloride 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS14495 and ABCV34_RS14500 are separated by 1 nucleotides ABCV34_RS14500 and ABCV34_RS14505 are separated by 128 nucleotides ABCV34_RS14505 and ABCV34_RS14510 are separated by 55 nucleotides
ABCV34_RS14495: ABCV34_RS14495 - D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase, at 3,071,750 to 3,072,238
_RS14495
ABCV34_RS14500: ABCV34_RS14500 - protein-L-isoaspartate O-methyltransferase, at 3,072,240 to 3,072,920
_RS14500
ABCV34_RS14505: ABCV34_RS14505 - bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 3,073,049 to 3,073,870
_RS14505
ABCV34_RS14510: ABCV34_RS14510 - thiazole synthase, at 3,073,926 to 3,074,729
_RS14510
Position (kb)
3073
3074 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3072.228 kb on + strand at 3072.228 kb on + strand at 3072.228 kb on + strand at 3072.228 kb on + strand at 3072.228 kb on + strand at 3072.228 kb on + strand at 3072.248 kb on + strand at 3072.248 kb on + strand at 3072.249 kb on - strand at 3072.956 kb on + strand at 3072.956 kb on + strand at 3072.956 kb on + strand at 3072.957 kb on - strand at 3072.957 kb on - strand at 3072.957 kb on - strand at 3072.957 kb on - strand at 3073.051 kb on - strand at 3073.051 kb on - strand at 3073.051 kb on - strand at 3073.859 kb on - strand at 3074.791 kb on + strand at 3074.792 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Aerobic; copper (II) chloride 1 remove 3,072,228 + -0.9 3,072,228 + -2.2 3,072,228 + -1.5 3,072,228 + -1.3 3,072,228 + -1.8 3,072,228 + -1.3 3,072,248 + -3.2 3,072,248 + -1.6 3,072,249 - -1.6 3,072,956 + -1.6 3,072,956 + -1.3 3,072,956 + -1.3 3,072,957 - -2.1 3,072,957 - -2.0 3,072,957 - +0.6 3,072,957 - -1.3 3,073,051 - -1.8 3,073,051 - -1.3 3,073,051 - -1.8 3,073,859 - -1.5 3,074,791 + +2.0 3,074,792 - -1.1
Or see this region's nucleotide sequence