Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS08025

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS08015 and ABIE51_RS08020 overlap by 4 nucleotidesABIE51_RS08020 and ABIE51_RS08025 are separated by 28 nucleotidesABIE51_RS08025 and ABIE51_RS08030 are separated by 27 nucleotides ABIE51_RS08015: ABIE51_RS08015 - polynucleotide adenylyltransferase PcnB, at 1,705,199 to 1,706,524 _RS08015 ABIE51_RS08020: ABIE51_RS08020 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 1,706,521 to 1,707,051 _RS08020 ABIE51_RS08025: ABIE51_RS08025 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 1,707,080 to 1,707,916 _RS08025 ABIE51_RS08030: ABIE51_RS08030 - pantoate--beta-alanine ligase, at 1,707,944 to 1,708,792 _RS08030 Position (kb) 1707 1708Strain fitness (log2 ratio) -1 0 1at 1707.020 kb on + strandat 1707.025 kb on + strandat 1707.025 kb on + strandat 1707.025 kb on + strandat 1707.025 kb on + strandat 1707.025 kb on + strandat 1707.026 kb on - strandat 1707.026 kb on - strandat 1707.026 kb on - strandat 1707.068 kb on + strandat 1707.069 kb on - strandat 1707.083 kb on + strandat 1707.083 kb on + strandat 1707.083 kb on + strandat 1707.908 kb on + strandat 1708.880 kb on + strandat 1708.880 kb on + strandat 1708.880 kb on + strandat 1708.880 kb on + strandat 1708.880 kb on + strandat 1708.881 kb on - strandat 1708.881 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
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1,707,020 + +0.1
1,707,025 + +0.2
1,707,025 + -0.2
1,707,025 + +0.0
1,707,025 + +0.3
1,707,025 + +0.5
1,707,026 - -1.4
1,707,026 - +0.2
1,707,026 - -0.9
1,707,068 + -0.2
1,707,069 - -0.3
1,707,083 + -0.5
1,707,083 + -1.5
1,707,083 + -0.6
1,707,908 + +1.7
1,708,880 + +0.4
1,708,880 + +0.1
1,708,880 + +0.2
1,708,880 + -0.3
1,708,880 + -0.9
1,708,881 - -0.2
1,708,881 - -1.6

Or see this region's nucleotide sequence