Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS04315

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS04310 and ABIE51_RS04315 overlap by 4 nucleotidesABIE51_RS04315 and ABIE51_RS04320 overlap by 4 nucleotidesABIE51_RS04320 and ABIE51_RS04325 overlap by 10 nucleotides ABIE51_RS04310: ABIE51_RS04310 - glycosyltransferase, at 927,355 to 931,488 _RS04310 ABIE51_RS04315: ABIE51_RS04315 - SIS domain-containing protein, at 931,485 to 933,089 _RS04315 ABIE51_RS04320: ABIE51_RS04320 - sugar phosphate nucleotidyltransferase, at 933,086 to 933,784 _RS04320 ABIE51_RS04325: ABIE51_RS04325 - HAD family hydrolase, at 933,775 to 934,383 _RS04325 Position (kb) 931 932 933 934Strain fitness (log2 ratio) -3 -2 -1 0 1at 930.767 kb on + strand, within ABIE51_RS04310at 930.767 kb on + strand, within ABIE51_RS04310at 933.102 kb on + strandat 933.805 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
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930,767 + ABIE51_RS04310 0.83 -3.3
930,767 + ABIE51_RS04310 0.83 -1.4
933,102 + -1.3
933,805 + +1.0

Or see this region's nucleotide sequence