Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS13385

Experiment: Aerobic; copper (II) chloride 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Aerobic; copper (II) chloride 1
2,835,296	+		ABCV34_RS13380	0.29	+0.1
2,835,318	+		ABCV34_RS13380	0.32	-1.2
2,835,318	+		ABCV34_RS13380	0.32	-1.0
2,835,318	+		ABCV34_RS13380	0.32	-1.5
2,835,319	-		ABCV34_RS13380	0.32	-2.2
2,835,327	+		ABCV34_RS13380	0.33	-1.4
2,835,327	+		ABCV34_RS13380	0.33	-1.6
2,835,327	+		ABCV34_RS13380	0.33	-1.8
2,835,327	+		ABCV34_RS13380	0.33	-1.8
2,835,327	+		ABCV34_RS13380	0.33	-1.5
2,835,327	+		ABCV34_RS13380	0.33	+0.7
2,835,327	+		ABCV34_RS13380	0.33	-1.6
2,835,327	+		ABCV34_RS13380	0.33	-1.2
2,835,327	+		ABCV34_RS13380	0.33	-0.8
2,835,327	+		ABCV34_RS13380	0.33	-0.9
2,835,328	-		ABCV34_RS13380	0.33	-1.8
2,835,328	-		ABCV34_RS13380	0.33	-0.9
2,835,328	-		ABCV34_RS13380	0.33	-0.3
2,835,328	-		ABCV34_RS13380	0.33	-1.5
2,835,328	-		ABCV34_RS13380	0.33	-2.4
2,835,328	-		ABCV34_RS13380	0.33	-1.4
2,835,328	-		ABCV34_RS13380	0.33	-2.8
2,835,438	+		ABCV34_RS13380	0.45	-0.8
2,835,438	+		ABCV34_RS13380	0.45	-2.2
2,835,438	+		ABCV34_RS13380	0.45	-0.7
2,835,438	+		ABCV34_RS13380	0.45	-0.7
2,835,439	-		ABCV34_RS13380	0.46	-0.9
2,835,439	-		ABCV34_RS13380	0.46	-1.5
2,835,439	-		ABCV34_RS13380	0.46	-0.6
2,835,439	-		ABCV34_RS13380	0.46	-2.2
2,835,439	-		ABCV34_RS13380	0.46	-1.1
2,835,439	-		ABCV34_RS13380	0.46	-1.2
2,835,439	-		ABCV34_RS13380	0.46	-1.8
2,835,439	-		ABCV34_RS13380	0.46	-1.5
2,835,463	-		ABCV34_RS13380	0.48	-0.4
2,835,649	-		ABCV34_RS13380	0.70	-3.3
2,835,649	-		ABCV34_RS13380	0.70	-1.0
2,835,649	-		ABCV34_RS13380	0.70	-0.8
2,835,649	-		ABCV34_RS13380	0.70	-1.1
2,835,652	+		ABCV34_RS13380	0.70	-1.6
2,835,752	+		ABCV34_RS13380	0.82	-1.3
2,835,752	+		ABCV34_RS13380	0.82	-1.8
2,835,752	+		ABCV34_RS13380	0.82	-2.5
2,835,752	+		ABCV34_RS13380	0.82	-2.2
2,835,819	+		ABCV34_RS13380	0.89	-2.6
2,835,858	+				-2.8
2,835,858	+				-1.9
2,835,858	+				-1.6
2,835,858	+				-1.3
2,835,859	-				-1.8
2,835,859	-				-1.4
2,836,003	+				-1.4
2,836,004	-				-1.3
2,836,045	+				-1.4
2,836,045	+				-0.8
2,836,045	+				-1.6
2,836,045	+				-3.0
2,836,045	+				-2.2
2,836,045	+				-1.4
2,836,045	+				-1.1
2,836,046	-				-0.5
2,836,046	-				-1.8
2,836,046	-				-1.9
2,836,046	-				-1.6
2,836,046	-				-0.4
2,836,046	-				-0.2
2,836,046	-				-1.3
2,836,067	+				-1.1
2,836,067	+				-1.7
2,836,067	+				-2.2
2,836,067	+				-1.3
2,836,067	+				-1.6
2,836,067	+				-1.5
2,836,068	-				-1.3
2,836,068	-				-2.2
2,836,068	-				-1.9
2,836,068	-				-1.2
2,836,068	-				-1.7
2,836,233	-		ABCV34_RS13385	0.18	-1.3
2,836,233	-		ABCV34_RS13385	0.18	-2.3
2,836,233	-		ABCV34_RS13385	0.18	-1.5
2,836,233	-		ABCV34_RS13385	0.18	-2.4
2,836,233	-		ABCV34_RS13385	0.18	-0.5
2,836,280	+		ABCV34_RS13385	0.27	-1.6
2,836,280	+		ABCV34_RS13385	0.27	-3.2
2,836,280	+		ABCV34_RS13385	0.27	-2.0
2,836,280	+		ABCV34_RS13385	0.27	-0.9
2,836,281	-		ABCV34_RS13385	0.27	-1.5
2,836,281	-		ABCV34_RS13385	0.27	-1.8
2,836,281	-		ABCV34_RS13385	0.27	-1.6
2,836,281	-		ABCV34_RS13385	0.27	-0.1
2,836,281	-		ABCV34_RS13385	0.27	-2.3
2,836,281	-		ABCV34_RS13385	0.27	-1.6
2,836,281	-		ABCV34_RS13385	0.27	-2.0
2,836,281	-		ABCV34_RS13385	0.27	-2.0
2,836,281	-		ABCV34_RS13385	0.27	-0.7
2,836,281	-		ABCV34_RS13385	0.27	+0.3
2,836,281	-		ABCV34_RS13385	0.27	-2.1
2,836,371	-		ABCV34_RS13385	0.44	-2.5
2,836,578	+		ABCV34_RS13385	0.83	-2.7
2,836,579	-		ABCV34_RS13385	0.83	-1.9
2,836,607	+		ABCV34_RS13385	0.89	-1.0
2,836,607	+		ABCV34_RS13385	0.89	-2.6
2,836,607	+		ABCV34_RS13385	0.89	+0.3
2,836,607	+		ABCV34_RS13385	0.89	-1.2
2,836,607	+		ABCV34_RS13385	0.89	-1.6
2,836,698	+				-1.7
2,836,698	+				-1.0
2,836,698	+				-1.4
2,836,699	-				-1.5
2,836,701	-				-2.1
2,836,701	-				-1.0
2,836,722	-				-1.8
2,836,723	+				-1.7
2,836,776	+				-2.8
2,836,776	+				-1.4
2,836,776	+				-1.8
2,836,776	+				-1.7
2,836,776	+				-2.5
2,836,777	-				-1.5
2,836,777	-				-1.1
2,836,777	-				-0.7
2,836,777	-				-1.1
2,836,777	-				-1.2
2,836,777	-				-2.0
2,836,777	-				-2.2
2,836,777	-				-1.6
2,836,779	-				-1.7
2,837,009	+		ABCV34_RS13390	0.14	-1.9
2,837,009	+		ABCV34_RS13390	0.14	-2.8
2,837,009	+		ABCV34_RS13390	0.14	-2.8
2,837,009	+		ABCV34_RS13390	0.14	-2.1
2,837,010	-		ABCV34_RS13390	0.14	-2.2
2,837,010	-		ABCV34_RS13390	0.14	-1.8
2,837,010	-		ABCV34_RS13390	0.14	+0.4
2,837,010	-		ABCV34_RS13390	0.14	-2.9
2,837,010	-		ABCV34_RS13390	0.14	-2.0
2,837,010	-		ABCV34_RS13390	0.14	-1.3
2,837,010	-		ABCV34_RS13390	0.14	-1.1
2,837,010	-		ABCV34_RS13390	0.14	-2.1
2,837,011	+		ABCV34_RS13390	0.14	-3.3
2,837,012	-		ABCV34_RS13390	0.14	-2.4
2,837,012	-		ABCV34_RS13390	0.14	-3.7
2,837,111	+		ABCV34_RS13390	0.21	-2.3
2,837,111	+		ABCV34_RS13390	0.21	-2.2
2,837,111	+		ABCV34_RS13390	0.21	-2.0
2,837,111	+		ABCV34_RS13390	0.21	-0.4
2,837,111	+		ABCV34_RS13390	0.21	-1.9
2,837,111	+		ABCV34_RS13390	0.21	-1.2
2,837,111	+		ABCV34_RS13390	0.21	-0.6
2,837,111	+		ABCV34_RS13390	0.21	-2.0
2,837,111	+		ABCV34_RS13390	0.21	+1.0
2,837,111	+		ABCV34_RS13390	0.21	-1.7
2,837,111	+		ABCV34_RS13390	0.21	-0.9
2,837,111	+		ABCV34_RS13390	0.21	-1.9
2,837,111	+		ABCV34_RS13390	0.21	-1.0
2,837,112	-		ABCV34_RS13390	0.21	-2.3
2,837,112	-		ABCV34_RS13390	0.21	-0.8
2,837,112	-		ABCV34_RS13390	0.21	-1.6
2,837,112	-		ABCV34_RS13390	0.21	+0.7
2,837,112	-		ABCV34_RS13390	0.21	-2.2
2,837,112	-		ABCV34_RS13390	0.21	-1.2
2,837,112	-		ABCV34_RS13390	0.21	-2.3
2,837,112	-		ABCV34_RS13390	0.21	-0.2
2,837,112	-		ABCV34_RS13390	0.21	-1.3
2,837,112	-		ABCV34_RS13390	0.21	-0.4
2,837,112	-		ABCV34_RS13390	0.21	-1.4
2,837,112	-		ABCV34_RS13390	0.21	-0.9
2,837,112	-		ABCV34_RS13390	0.21	-1.3
2,837,112	-		ABCV34_RS13390	0.21	+0.1
2,837,112	-		ABCV34_RS13390	0.21	-0.8
2,837,112	-		ABCV34_RS13390	0.21	-1.0
2,837,112	-		ABCV34_RS13390	0.21	-0.2
2,837,113	+		ABCV34_RS13390	0.21	-1.3
2,837,113	+		ABCV34_RS13390	0.21	-2.8
2,837,114	-		ABCV34_RS13390	0.21	-1.7
2,837,214	-		ABCV34_RS13390	0.28	-1.9
2,837,214	-		ABCV34_RS13390	0.28	-2.0
2,837,214	-		ABCV34_RS13390	0.28	-0.6
2,837,234	+		ABCV34_RS13390	0.30	-1.6
2,837,234	+		ABCV34_RS13390	0.30	-1.1
2,837,234	+		ABCV34_RS13390	0.30	-2.2
2,837,234	+		ABCV34_RS13390	0.30	-1.7
2,837,309	+		ABCV34_RS13390	0.35	-1.3
2,837,309	+		ABCV34_RS13390	0.35	-1.3
2,837,309	+		ABCV34_RS13390	0.35	-1.4
2,837,309	+		ABCV34_RS13390	0.35	-1.1
2,837,309	+		ABCV34_RS13390	0.35	-2.0
2,837,309	+		ABCV34_RS13390	0.35	-2.3
2,837,309	+		ABCV34_RS13390	0.35	-1.3
2,837,309	+		ABCV34_RS13390	0.35	-1.2
2,837,310	-		ABCV34_RS13390	0.35	-0.3
2,837,310	-		ABCV34_RS13390	0.35	-2.0
2,837,310	-		ABCV34_RS13390	0.35	-1.4
2,837,310	-		ABCV34_RS13390	0.35	-1.4
2,837,310	-		ABCV34_RS13390	0.35	-1.5
2,837,310	-		ABCV34_RS13390	0.35	-3.0
2,837,310	-		ABCV34_RS13390	0.35	+0.8
2,837,310	-		ABCV34_RS13390	0.35	-1.3
2,837,310	-		ABCV34_RS13390	0.35	-1.0
2,837,310	-		ABCV34_RS13390	0.35	-1.5
2,837,310	-		ABCV34_RS13390	0.35	-2.0
2,837,346	+		ABCV34_RS13390	0.38	-1.6
2,837,346	+		ABCV34_RS13390	0.38	-1.3
2,837,346	+		ABCV34_RS13390	0.38	-1.4
2,837,346	+		ABCV34_RS13390	0.38	-2.0
2,837,346	+		ABCV34_RS13390	0.38	-1.4
2,837,346	+		ABCV34_RS13390	0.38	-3.4
2,837,346	+		ABCV34_RS13390	0.38	-0.3
2,837,346	+		ABCV34_RS13390	0.38	-1.6
2,837,346	+		ABCV34_RS13390	0.38	-1.4
2,837,346	+		ABCV34_RS13390	0.38	-0.5
2,837,346	+		ABCV34_RS13390	0.38	-1.5
2,837,346	+		ABCV34_RS13390	0.38	-1.9
2,837,346	+		ABCV34_RS13390	0.38	-1.4
2,837,346	+		ABCV34_RS13390	0.38	-1.2
2,837,346	+		ABCV34_RS13390	0.38	-0.9
2,837,346	+		ABCV34_RS13390	0.38	-1.7
2,837,347	-		ABCV34_RS13390	0.38	-1.6
2,837,347	-		ABCV34_RS13390	0.38	-0.3
2,837,347	-		ABCV34_RS13390	0.38	-0.2
2,837,347	-		ABCV34_RS13390	0.38	-1.0
2,837,347	-		ABCV34_RS13390	0.38	-2.5
2,837,347	-		ABCV34_RS13390	0.38	-0.5
2,837,347	-		ABCV34_RS13390	0.38	-3.2
2,837,347	-		ABCV34_RS13390	0.38	-1.7
2,837,347	-		ABCV34_RS13390	0.38	-1.3
2,837,377	+		ABCV34_RS13390	0.40	-1.6
2,837,377	+		ABCV34_RS13390	0.40	-0.7
2,837,377	+		ABCV34_RS13390	0.40	-1.8
2,837,377	+		ABCV34_RS13390	0.40	-1.4
2,837,377	+		ABCV34_RS13390	0.40	-1.1
2,837,377	+		ABCV34_RS13390	0.40	-1.5
2,837,378	-		ABCV34_RS13390	0.40	-1.5
2,837,378	-		ABCV34_RS13390	0.40	-2.5
2,837,378	-		ABCV34_RS13390	0.40	-1.5
2,837,378	-		ABCV34_RS13390	0.40	-2.0
2,837,378	-		ABCV34_RS13390	0.40	-2.0
2,837,378	-		ABCV34_RS13390	0.40	-0.6
2,837,378	-		ABCV34_RS13390	0.40	-0.2
2,837,381	+		ABCV34_RS13390	0.40	-3.0
2,837,381	+		ABCV34_RS13390	0.40	-1.5
2,837,381	+		ABCV34_RS13390	0.40	-1.3
2,837,381	+		ABCV34_RS13390	0.40	-1.1
2,837,381	+		ABCV34_RS13390	0.40	-1.2
2,837,381	+		ABCV34_RS13390	0.40	-0.3
2,837,381	+		ABCV34_RS13390	0.40	-1.7
2,837,381	+		ABCV34_RS13390	0.40	-1.7
2,837,381	+		ABCV34_RS13390	0.40	-2.4
2,837,381	+		ABCV34_RS13390	0.40	-0.3
2,837,381	+		ABCV34_RS13390	0.40	-3.2
2,837,381	+		ABCV34_RS13390	0.40	-1.5
2,837,381	+		ABCV34_RS13390	0.40	-1.6
2,837,381	+		ABCV34_RS13390	0.40	-1.5
2,837,381	+		ABCV34_RS13390	0.40	-1.8
2,837,381	+		ABCV34_RS13390	0.40	-1.8
2,837,382	-		ABCV34_RS13390	0.40	-2.8
2,837,382	-		ABCV34_RS13390	0.40	-1.8
2,837,382	-		ABCV34_RS13390	0.40	-1.2
2,837,382	-		ABCV34_RS13390	0.40	-0.8
2,837,382	-		ABCV34_RS13390	0.40	-4.3
2,837,382	-		ABCV34_RS13390	0.40	-0.6
2,837,382	-		ABCV34_RS13390	0.40	-1.0
2,837,382	-		ABCV34_RS13390	0.40	-1.2
2,837,382	-		ABCV34_RS13390	0.40	-1.2
2,837,382	-		ABCV34_RS13390	0.40	-0.8
2,837,382	-		ABCV34_RS13390	0.40	+0.0
2,837,382	-		ABCV34_RS13390	0.40	-1.5
2,837,382	-		ABCV34_RS13390	0.40	+0.0
2,837,382	-		ABCV34_RS13390	0.40	-1.2
2,837,382	-		ABCV34_RS13390	0.40	-0.8
2,837,382	-		ABCV34_RS13390	0.40	-0.7
2,837,382	-		ABCV34_RS13390	0.40	-1.4
2,837,384	-		ABCV34_RS13390	0.40	-1.0
2,837,415	+		ABCV34_RS13390	0.42	+0.6
2,837,415	+		ABCV34_RS13390	0.42	-2.5
2,837,415	+		ABCV34_RS13390	0.42	-0.9
2,837,415	+		ABCV34_RS13390	0.42	-0.8
2,837,415	+		ABCV34_RS13390	0.42	-2.1
2,837,614	+		ABCV34_RS13390	0.56	-1.4
2,837,614	+		ABCV34_RS13390	0.56	-1.5