Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS08385

Experiment: L-Rhamnose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS32835 and ECOLIN_RS08380 are separated by 540 nucleotidesECOLIN_RS08380 and ECOLIN_RS08385 are separated by 18 nucleotidesECOLIN_RS08385 and ECOLIN_RS32845 are separated by 99 nucleotidesECOLIN_RS32845 and ECOLIN_RS08395 are separated by 21 nucleotides ECOLIN_RS32835: ECOLIN_RS32835 - glutathione S-transferase family protein, at 1,642,958 to 1,643,576 _RS32835 ECOLIN_RS08380: ECOLIN_RS08380 - type VI secretion system PAAR protein, at 1,644,117 to 1,644,401 _RS08380 ECOLIN_RS08385: ECOLIN_RS08385 - type VI secretion system tip protein TssI/VgrG, at 1,644,420 to 1,646,378 _RS08385 ECOLIN_RS32845: ECOLIN_RS32845 - DUF4123 domain-containing protein, at 1,646,478 to 1,647,218 _RS32845 ECOLIN_RS08395: ECOLIN_RS08395 - hypothetical protein, at 1,647,240 to 1,648,791 _RS08395 Position (kb) 1644 1645 1646 1647Strain fitness (log2 ratio) -1 0 1at 1645.770 kb on + strand, within ECOLIN_RS08385at 1646.373 kb on - strandat 1646.404 kb on + strandat 1646.888 kb on + strand, within ECOLIN_RS32845

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose
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1,645,770 + ECOLIN_RS08385 0.69 +0.8
1,646,373 - +1.2
1,646,404 + +1.2
1,646,888 + ECOLIN_RS32845 0.55 -0.1

Or see this region's nucleotide sequence