Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS04510

Experiment: L-Rhamnose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS04500 and ECOLIN_RS04505 are separated by 169 nucleotidesECOLIN_RS04505 and ECOLIN_RS04510 are separated by 171 nucleotidesECOLIN_RS04510 and ECOLIN_RS04515 are separated by 269 nucleotidesECOLIN_RS04515 and ECOLIN_RS04520 are separated by 29 nucleotides ECOLIN_RS04500: ECOLIN_RS04500 - transporter, at 914,167 to 914,505 _RS04500 ECOLIN_RS04505: ECOLIN_RS04505 - transporter, at 914,675 to 915,013 _RS04505 ECOLIN_RS04510: ECOLIN_RS04510 - aspartate:alanine antiporter, at 915,185 to 916,870 _RS04510 ECOLIN_RS04515: ECOLIN_RS04515 - inner membrane protein YbjM, at 917,140 to 917,517 _RS04515 ECOLIN_RS04520: ECOLIN_RS04520 - glutaredoxin 1, at 917,547 to 917,804 _RS04520 Position (kb) 915 916 917Strain fitness (log2 ratio) -1 0 1at 915.596 kb on - strand, within ECOLIN_RS04510at 916.053 kb on - strand, within ECOLIN_RS04510at 916.239 kb on + strand, within ECOLIN_RS04510at 916.542 kb on - strand, within ECOLIN_RS04510at 916.844 kb on + strandat 917.049 kb on + strandat 917.702 kb on - strand, within ECOLIN_RS04520at 917.768 kb on - strand, within ECOLIN_RS04520at 917.820 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose
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915,596 - ECOLIN_RS04510 0.24 -0.9
916,053 - ECOLIN_RS04510 0.51 +0.2
916,239 + ECOLIN_RS04510 0.63 +0.1
916,542 - ECOLIN_RS04510 0.80 -0.3
916,844 + +0.7
917,049 + +0.9
917,702 - ECOLIN_RS04520 0.60 -1.0
917,768 - ECOLIN_RS04520 0.86 +0.2
917,820 - -0.2

Or see this region's nucleotide sequence