Experiment: L-Rhamnose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS03010 and ECOLIN_RS03015 are separated by 10 nucleotides ECOLIN_RS03015 and ECOLIN_RS03020 overlap by 4 nucleotides ECOLIN_RS03020 and ECOLIN_RS03025 are separated by 132 nucleotides
ECOLIN_RS03010: ECOLIN_RS03010 - DUF1116 domain-containing protein, at 622,274 to 623,533
_RS03010
ECOLIN_RS03015: ECOLIN_RS03015 - DUF2877 domain-containing protein, at 623,544 to 624,359
_RS03015
ECOLIN_RS03020: ECOLIN_RS03020 - carbamate kinase, at 624,356 to 625,249
_RS03020
ECOLIN_RS03025: ECOLIN_RS03025 - 5-(carboxyamino)imidazole ribonucleotide synthase, at 625,382 to 626,449
_RS03025
Position (kb) 624
625
626 Strain fitness (log2 ratio) -1
0
1
2 at 624.182 kb on - strand, within ECOLIN_RS03015 at 624.293 kb on + strand at 624.558 kb on + strand, within ECOLIN_RS03020 at 624.579 kb on + strand, within ECOLIN_RS03020 at 624.611 kb on + strand, within ECOLIN_RS03020 at 624.773 kb on + strand, within ECOLIN_RS03020 at 624.773 kb on + strand, within ECOLIN_RS03020 at 625.037 kb on + strand, within ECOLIN_RS03020 at 625.795 kb on - strand, within ECOLIN_RS03025 at 625.982 kb on + strand, within ECOLIN_RS03025 at 625.982 kb on + strand, within ECOLIN_RS03025
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose remove 624,182 - ECOLIN_RS03015 0.78 +0.9 624,293 + -0.1 624,558 + ECOLIN_RS03020 0.23 +0.0 624,579 + ECOLIN_RS03020 0.25 +0.3 624,611 + ECOLIN_RS03020 0.29 -0.1 624,773 + ECOLIN_RS03020 0.47 +1.8 624,773 + ECOLIN_RS03020 0.47 +1.3 625,037 + ECOLIN_RS03020 0.76 +1.2 625,795 - ECOLIN_RS03025 0.39 -0.3 625,982 + ECOLIN_RS03025 0.56 -0.8 625,982 + ECOLIN_RS03025 0.56 +0.8
Or see this region's nucleotide sequence