Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS02395

Experiment: L-Rhamnose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECOLIN_RS02390 and ECOLIN_RS02395 are separated by 268 nucleotidesECOLIN_RS02395 and ECOLIN_RS02400 are separated by 125 nucleotides ECOLIN_RS02390: ECOLIN_RS02390 - fructokinase, at 484,937 to 485,845 _RS02390 ECOLIN_RS02395: ECOLIN_RS02395 - MFS transporter AraJ, at 486,114 to 487,298 _RS02395 ECOLIN_RS02400: ECOLIN_RS02400 - exonuclease subunit SbcC, at 487,424 to 490,567 _RS02400 Position (kb) 486 487 488Strain fitness (log2 ratio) -2 -1 0 1 2at 485.211 kb on + strand, within ECOLIN_RS02390at 485.211 kb on + strand, within ECOLIN_RS02390at 485.706 kb on + strand, within ECOLIN_RS02390at 485.717 kb on + strand, within ECOLIN_RS02390at 486.116 kb on - strandat 486.233 kb on - strand, within ECOLIN_RS02395at 486.233 kb on - strand, within ECOLIN_RS02395at 486.237 kb on - strand, within ECOLIN_RS02395at 486.237 kb on - strand, within ECOLIN_RS02395at 486.582 kb on - strand, within ECOLIN_RS02395at 486.615 kb on - strand, within ECOLIN_RS02395at 487.159 kb on + strand, within ECOLIN_RS02395at 487.353 kb on - strandat 487.757 kb on - strand, within ECOLIN_RS02400at 487.892 kb on - strand, within ECOLIN_RS02400

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose
remove
485,211 + ECOLIN_RS02390 0.30 +1.9
485,211 + ECOLIN_RS02390 0.30 -0.1
485,706 + ECOLIN_RS02390 0.85 -1.6
485,717 + ECOLIN_RS02390 0.86 +0.7
486,116 - -0.5
486,233 - ECOLIN_RS02395 0.10 +1.1
486,233 - ECOLIN_RS02395 0.10 +1.4
486,237 - ECOLIN_RS02395 0.10 -0.7
486,237 - ECOLIN_RS02395 0.10 +0.4
486,582 - ECOLIN_RS02395 0.39 +0.7
486,615 - ECOLIN_RS02395 0.42 -0.5
487,159 + ECOLIN_RS02395 0.88 +0.1
487,353 - +0.6
487,757 - ECOLIN_RS02400 0.11 -2.0
487,892 - ECOLIN_RS02400 0.15 -0.2

Or see this region's nucleotide sequence