Experiment: L-Rhamnose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS00355 and ECOLIN_RS00360 are separated by 113 nucleotides ECOLIN_RS00360 and ECOLIN_RS00365 overlap by 17 nucleotides
ECOLIN_RS00355: ECOLIN_RS00355 - DedA family protein, at 74,331 to 75,095
_RS00355
ECOLIN_RS00360: ECOLIN_RS00360 - thiamine ABC transporter ATP-binding protein ThiQ, at 75,209 to 75,907
_RS00360
ECOLIN_RS00365: ECOLIN_RS00365 - thiamine/thiamine pyrophosphate ABC transporter permease ThiP, at 75,891 to 77,501
_RS00365
Position (kb) 75
76 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 74.282 kb on + strand at 74.354 kb on + strand at 74.366 kb on + strand at 74.366 kb on + strand at 74.373 kb on + strand at 74.373 kb on + strand at 74.491 kb on + strand, within ECOLIN_RS00355 at 74.491 kb on + strand, within ECOLIN_RS00355 at 74.962 kb on - strand, within ECOLIN_RS00355 at 75.060 kb on + strand at 75.060 kb on + strand at 75.169 kb on - strand at 75.208 kb on - strand at 75.211 kb on - strand at 75.211 kb on - strand at 75.603 kb on - strand, within ECOLIN_RS00360 at 75.890 kb on - strand at 76.152 kb on + strand, within ECOLIN_RS00365 at 76.153 kb on - strand, within ECOLIN_RS00365 at 76.474 kb on - strand, within ECOLIN_RS00365 at 76.643 kb on + strand, within ECOLIN_RS00365 at 76.644 kb on - strand, within ECOLIN_RS00365 at 76.810 kb on + strand, within ECOLIN_RS00365 at 76.896 kb on + strand, within ECOLIN_RS00365 at 76.896 kb on + strand, within ECOLIN_RS00365
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose remove 74,282 + +1.4 74,354 + -0.8 74,366 + +0.1 74,366 + -0.7 74,373 + -1.8 74,373 + -0.2 74,491 + ECOLIN_RS00355 0.21 -0.2 74,491 + ECOLIN_RS00355 0.21 +0.4 74,962 - ECOLIN_RS00355 0.82 +0.3 75,060 + -0.2 75,060 + -0.2 75,169 - -0.4 75,208 - +0.5 75,211 - -0.7 75,211 - -0.5 75,603 - ECOLIN_RS00360 0.56 -0.4 75,890 - +0.4 76,152 + ECOLIN_RS00365 0.16 +0.3 76,153 - ECOLIN_RS00365 0.16 -0.1 76,474 - ECOLIN_RS00365 0.36 -2.0 76,643 + ECOLIN_RS00365 0.47 -1.3 76,644 - ECOLIN_RS00365 0.47 +0.4 76,810 + ECOLIN_RS00365 0.57 +0.3 76,896 + ECOLIN_RS00365 0.62 +3.0 76,896 + ECOLIN_RS00365 0.62 -1.0
Or see this region's nucleotide sequence