Experiment: Aerobic; copper (II) chloride 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS04365 and ABCV34_RS04370 are separated by 16 nucleotides ABCV34_RS04370 and ABCV34_RS04375 overlap by 4 nucleotides
ABCV34_RS04365: ABCV34_RS04365 - ATPase, T2SS/T4P/T4SS family, at 951,188 to 952,924
_RS04365
ABCV34_RS04370: ABCV34_RS04370 - pilus assembly protein N-terminal domain-containing protein, at 952,941 to 954,395
_RS04370
ABCV34_RS04375: ABCV34_RS04375 - Flp pilus assembly protein CpaB, at 954,392 to 955,438
_RS04375
Position (kb) 952
953
954
955 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 952.286 kb on + strand, within ABCV34_RS04365 at 952.286 kb on + strand, within ABCV34_RS04365 at 952.286 kb on + strand, within ABCV34_RS04365 at 952.287 kb on - strand, within ABCV34_RS04365 at 952.287 kb on - strand, within ABCV34_RS04365 at 952.698 kb on + strand, within ABCV34_RS04365 at 952.699 kb on - strand, within ABCV34_RS04365 at 952.699 kb on - strand, within ABCV34_RS04365 at 953.474 kb on + strand, within ABCV34_RS04370 at 953.475 kb on - strand, within ABCV34_RS04370 at 953.500 kb on + strand, within ABCV34_RS04370 at 953.500 kb on + strand, within ABCV34_RS04370 at 953.501 kb on - strand, within ABCV34_RS04370 at 953.501 kb on - strand, within ABCV34_RS04370 at 953.501 kb on - strand, within ABCV34_RS04370 at 953.638 kb on + strand, within ABCV34_RS04370 at 953.799 kb on + strand, within ABCV34_RS04370 at 954.046 kb on + strand, within ABCV34_RS04370 at 954.190 kb on - strand, within ABCV34_RS04370 at 954.282 kb on + strand at 954.368 kb on + strand at 954.368 kb on + strand at 954.368 kb on + strand at 954.369 kb on - strand at 954.369 kb on - strand at 954.383 kb on - strand at 954.666 kb on + strand, within ABCV34_RS04375 at 954.667 kb on - strand, within ABCV34_RS04375 at 954.667 kb on - strand, within ABCV34_RS04375 at 954.667 kb on - strand, within ABCV34_RS04375 at 954.864 kb on + strand, within ABCV34_RS04375 at 954.864 kb on + strand, within ABCV34_RS04375 at 954.864 kb on + strand, within ABCV34_RS04375 at 954.865 kb on - strand, within ABCV34_RS04375 at 954.981 kb on + strand, within ABCV34_RS04375 at 954.981 kb on + strand, within ABCV34_RS04375 at 954.981 kb on + strand, within ABCV34_RS04375 at 954.981 kb on + strand, within ABCV34_RS04375 at 954.981 kb on + strand, within ABCV34_RS04375 at 954.981 kb on + strand, within ABCV34_RS04375 at 954.981 kb on + strand, within ABCV34_RS04375 at 954.981 kb on + strand, within ABCV34_RS04375 at 954.981 kb on + strand, within ABCV34_RS04375 at 954.982 kb on - strand, within ABCV34_RS04375 at 954.982 kb on - strand, within ABCV34_RS04375 at 954.982 kb on - strand, within ABCV34_RS04375 at 954.982 kb on - strand, within ABCV34_RS04375 at 954.982 kb on - strand, within ABCV34_RS04375 at 954.982 kb on - strand, within ABCV34_RS04375 at 954.982 kb on - strand, within ABCV34_RS04375 at 954.982 kb on - strand, within ABCV34_RS04375 at 954.982 kb on - strand, within ABCV34_RS04375 at 954.982 kb on - strand, within ABCV34_RS04375 at 954.982 kb on - strand, within ABCV34_RS04375 at 954.982 kb on - strand, within ABCV34_RS04375 at 954.982 kb on - strand, within ABCV34_RS04375 at 954.982 kb on - strand, within ABCV34_RS04375 at 954.982 kb on - strand, within ABCV34_RS04375 at 954.982 kb on - strand, within ABCV34_RS04375 at 955.151 kb on + strand, within ABCV34_RS04375 at 955.152 kb on - strand, within ABCV34_RS04375 at 955.152 kb on - strand, within ABCV34_RS04375 at 955.152 kb on - strand, within ABCV34_RS04375
Per-strain Table
Position Strand Gene LocusTag Fraction Aerobic; copper (II) chloride 1 remove 952,286 + ABCV34_RS04365 0.63 -1.2 952,286 + ABCV34_RS04365 0.63 -0.4 952,286 + ABCV34_RS04365 0.63 -2.0 952,287 - ABCV34_RS04365 0.63 -0.6 952,287 - ABCV34_RS04365 0.63 -0.4 952,698 + ABCV34_RS04365 0.87 -0.8 952,699 - ABCV34_RS04365 0.87 -1.0 952,699 - ABCV34_RS04365 0.87 -1.2 953,474 + ABCV34_RS04370 0.37 -1.0 953,475 - ABCV34_RS04370 0.37 -1.3 953,500 + ABCV34_RS04370 0.38 +0.0 953,500 + ABCV34_RS04370 0.38 -0.9 953,501 - ABCV34_RS04370 0.38 -0.7 953,501 - ABCV34_RS04370 0.38 -2.7 953,501 - ABCV34_RS04370 0.38 -0.7 953,638 + ABCV34_RS04370 0.48 -1.5 953,799 + ABCV34_RS04370 0.59 -0.3 954,046 + ABCV34_RS04370 0.76 -1.5 954,190 - ABCV34_RS04370 0.86 -0.6 954,282 + -0.7 954,368 + -1.2 954,368 + -0.9 954,368 + -0.6 954,369 - -1.0 954,369 - -0.1 954,383 - -0.8 954,666 + ABCV34_RS04375 0.26 -0.8 954,667 - ABCV34_RS04375 0.26 -1.9 954,667 - ABCV34_RS04375 0.26 -0.4 954,667 - ABCV34_RS04375 0.26 -1.7 954,864 + ABCV34_RS04375 0.45 -1.6 954,864 + ABCV34_RS04375 0.45 -1.6 954,864 + ABCV34_RS04375 0.45 -0.4 954,865 - ABCV34_RS04375 0.45 -0.7 954,981 + ABCV34_RS04375 0.56 -2.2 954,981 + ABCV34_RS04375 0.56 -1.9 954,981 + ABCV34_RS04375 0.56 -1.3 954,981 + ABCV34_RS04375 0.56 -0.9 954,981 + ABCV34_RS04375 0.56 -0.5 954,981 + ABCV34_RS04375 0.56 -2.7 954,981 + ABCV34_RS04375 0.56 -1.6 954,981 + ABCV34_RS04375 0.56 -1.3 954,981 + ABCV34_RS04375 0.56 -2.2 954,982 - ABCV34_RS04375 0.56 -1.1 954,982 - ABCV34_RS04375 0.56 -1.0 954,982 - ABCV34_RS04375 0.56 -1.4 954,982 - ABCV34_RS04375 0.56 -3.0 954,982 - ABCV34_RS04375 0.56 -1.5 954,982 - ABCV34_RS04375 0.56 -1.2 954,982 - ABCV34_RS04375 0.56 -1.3 954,982 - ABCV34_RS04375 0.56 -1.5 954,982 - ABCV34_RS04375 0.56 -1.3 954,982 - ABCV34_RS04375 0.56 -1.1 954,982 - ABCV34_RS04375 0.56 -1.1 954,982 - ABCV34_RS04375 0.56 -1.8 954,982 - ABCV34_RS04375 0.56 -0.4 954,982 - ABCV34_RS04375 0.56 -1.5 954,982 - ABCV34_RS04375 0.56 -0.4 954,982 - ABCV34_RS04375 0.56 -0.9 955,151 + ABCV34_RS04375 0.72 +0.5 955,152 - ABCV34_RS04375 0.73 -1.0 955,152 - ABCV34_RS04375 0.73 -1.6 955,152 - ABCV34_RS04375 0.73 -0.3
Or see this region's nucleotide sequence