Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS16020

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS16015 and ABIE51_RS16020 overlap by 4 nucleotidesABIE51_RS16020 and ABIE51_RS16025 overlap by 1 nucleotidesABIE51_RS16025 and ABIE51_RS16030 are separated by 88 nucleotides ABIE51_RS16015: ABIE51_RS16015 - aspartate carbamoyltransferase catalytic subunit, at 3,467,844 to 3,468,767 _RS16015 ABIE51_RS16020: ABIE51_RS16020 - Holliday junction resolvase RuvX, at 3,468,764 to 3,469,291 _RS16020 ABIE51_RS16025: ABIE51_RS16025 - YqgE/AlgH family protein, at 3,469,291 to 3,469,857 _RS16025 ABIE51_RS16030: ABIE51_RS16030 - Zn-dependent hydrolase, at 3,469,946 to 3,471,646 _RS16030 Position (kb) 3468 3469 3470Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3467.912 kb on + strandat 3468.043 kb on + strand, within ABIE51_RS16015at 3468.044 kb on - strand, within ABIE51_RS16015at 3468.661 kb on + strand, within ABIE51_RS16015at 3468.661 kb on + strand, within ABIE51_RS16015at 3468.662 kb on - strand, within ABIE51_RS16015at 3468.662 kb on - strand, within ABIE51_RS16015at 3469.308 kb on - strandat 3469.539 kb on + strand, within ABIE51_RS16025at 3469.539 kb on + strand, within ABIE51_RS16025at 3469.540 kb on - strand, within ABIE51_RS16025at 3469.540 kb on - strand, within ABIE51_RS16025at 3469.540 kb on - strand, within ABIE51_RS16025at 3469.710 kb on - strand, within ABIE51_RS16025at 3469.710 kb on - strand, within ABIE51_RS16025at 3469.910 kb on - strandat 3469.910 kb on - strandat 3469.910 kb on - strandat 3469.910 kb on - strandat 3470.078 kb on + strandat 3470.078 kb on + strandat 3470.079 kb on - strandat 3470.079 kb on - strandat 3470.079 kb on - strandat 3470.103 kb on - strandat 3470.204 kb on + strand, within ABIE51_RS16030at 3470.205 kb on - strand, within ABIE51_RS16030at 3470.205 kb on - strand, within ABIE51_RS16030

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
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3,467,912 + -1.6
3,468,043 + ABIE51_RS16015 0.22 -0.4
3,468,044 - ABIE51_RS16015 0.22 -0.9
3,468,661 + ABIE51_RS16015 0.88 -0.7
3,468,661 + ABIE51_RS16015 0.88 -0.7
3,468,662 - ABIE51_RS16015 0.89 -4.2
3,468,662 - ABIE51_RS16015 0.89 -1.7
3,469,308 - +0.2
3,469,539 + ABIE51_RS16025 0.44 +0.2
3,469,539 + ABIE51_RS16025 0.44 -1.3
3,469,540 - ABIE51_RS16025 0.44 -0.7
3,469,540 - ABIE51_RS16025 0.44 -0.0
3,469,540 - ABIE51_RS16025 0.44 -0.6
3,469,710 - ABIE51_RS16025 0.74 -0.2
3,469,710 - ABIE51_RS16025 0.74 +0.7
3,469,910 - +0.1
3,469,910 - -0.2
3,469,910 - +0.2
3,469,910 - +0.1
3,470,078 + +1.0
3,470,078 + +0.0
3,470,079 - +0.6
3,470,079 - -0.9
3,470,079 - -0.1
3,470,103 - -0.5
3,470,204 + ABIE51_RS16030 0.15 +0.4
3,470,205 - ABIE51_RS16030 0.15 -0.2
3,470,205 - ABIE51_RS16030 0.15 -0.3

Or see this region's nucleotide sequence