Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS04620 and ABIE51_RS04625 are separated by 101 nucleotides ABIE51_RS04625 and ABIE51_RS04630 overlap by 1 nucleotides ABIE51_RS04630 and ABIE51_RS04635 are separated by 22 nucleotides
ABIE51_RS04620: ABIE51_RS04620 - serine hydroxymethyltransferase, at 1,001,436 to 1,002,704
_RS04620
ABIE51_RS04625: ABIE51_RS04625 - transcriptional regulator NrdR, at 1,002,806 to 1,003,327
_RS04625
ABIE51_RS04630: ABIE51_RS04630 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD, at 1,003,327 to 1,004,421
_RS04630
ABIE51_RS04635: ABIE51_RS04635 - class I SAM-dependent methyltransferase, at 1,004,444 to 1,005,199
_RS04635
Position (kb)
1003
1004
1005 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1002.369 kb on + strand, within ABIE51_RS04620 at 1002.369 kb on + strand, within ABIE51_RS04620 at 1002.545 kb on + strand, within ABIE51_RS04620 at 1002.751 kb on + strand at 1002.805 kb on + strand at 1002.805 kb on + strand at 1002.805 kb on + strand at 1002.806 kb on - strand at 1002.806 kb on - strand at 1004.423 kb on - strand at 1004.423 kb on - strand at 1004.486 kb on + strand at 1004.486 kb on + strand at 1004.487 kb on - strand at 1004.918 kb on + strand, within ABIE51_RS04635 at 1005.041 kb on + strand, within ABIE51_RS04635 at 1005.041 kb on + strand, within ABIE51_RS04635 at 1005.041 kb on + strand, within ABIE51_RS04635 at 1005.041 kb on + strand, within ABIE51_RS04635 at 1005.041 kb on + strand, within ABIE51_RS04635 at 1005.256 kb on + strand at 1005.256 kb on + strand at 1005.256 kb on + strand at 1005.256 kb on + strand at 1005.257 kb on - strand at 1005.295 kb on - strand at 1005.332 kb on + strand at 1005.333 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media remove 1,002,369 + ABIE51_RS04620 0.74 -0.7 1,002,369 + ABIE51_RS04620 0.74 -2.3 1,002,545 + ABIE51_RS04620 0.87 +2.0 1,002,751 + +0.0 1,002,805 + -0.0 1,002,805 + -1.2 1,002,805 + +1.8 1,002,806 - -0.7 1,002,806 - -0.7 1,004,423 - +0.3 1,004,423 - -0.3 1,004,486 + +1.1 1,004,486 + +0.7 1,004,487 - +0.8 1,004,918 + ABIE51_RS04635 0.63 +0.7 1,005,041 + ABIE51_RS04635 0.79 +0.3 1,005,041 + ABIE51_RS04635 0.79 +0.4 1,005,041 + ABIE51_RS04635 0.79 -0.2 1,005,041 + ABIE51_RS04635 0.79 +0.4 1,005,041 + ABIE51_RS04635 0.79 +1.0 1,005,256 + +0.4 1,005,256 + -0.3 1,005,256 + -0.0 1,005,256 + -0.3 1,005,257 - -0.2 1,005,295 - +1.0 1,005,332 + -0.2 1,005,333 - +0.1
Or see this region's nucleotide sequence