Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS04630

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS04620 and ABIE51_RS04625 are separated by 101 nucleotidesABIE51_RS04625 and ABIE51_RS04630 overlap by 1 nucleotidesABIE51_RS04630 and ABIE51_RS04635 are separated by 22 nucleotides ABIE51_RS04620: ABIE51_RS04620 - serine hydroxymethyltransferase, at 1,001,436 to 1,002,704 _RS04620 ABIE51_RS04625: ABIE51_RS04625 - transcriptional regulator NrdR, at 1,002,806 to 1,003,327 _RS04625 ABIE51_RS04630: ABIE51_RS04630 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD, at 1,003,327 to 1,004,421 _RS04630 ABIE51_RS04635: ABIE51_RS04635 - class I SAM-dependent methyltransferase, at 1,004,444 to 1,005,199 _RS04635 Position (kb) 1003 1004 1005Strain fitness (log2 ratio) -2 -1 0 1 2at 1002.369 kb on + strand, within ABIE51_RS04620at 1002.369 kb on + strand, within ABIE51_RS04620at 1002.545 kb on + strand, within ABIE51_RS04620at 1002.751 kb on + strandat 1002.805 kb on + strandat 1002.805 kb on + strandat 1002.805 kb on + strandat 1002.806 kb on - strandat 1002.806 kb on - strandat 1004.423 kb on - strandat 1004.423 kb on - strandat 1004.486 kb on + strandat 1004.486 kb on + strandat 1004.487 kb on - strandat 1004.918 kb on + strand, within ABIE51_RS04635at 1005.041 kb on + strand, within ABIE51_RS04635at 1005.041 kb on + strand, within ABIE51_RS04635at 1005.041 kb on + strand, within ABIE51_RS04635at 1005.041 kb on + strand, within ABIE51_RS04635at 1005.041 kb on + strand, within ABIE51_RS04635at 1005.256 kb on + strandat 1005.256 kb on + strandat 1005.256 kb on + strandat 1005.256 kb on + strandat 1005.257 kb on - strandat 1005.295 kb on - strandat 1005.332 kb on + strandat 1005.333 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
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1,002,369 + ABIE51_RS04620 0.74 -0.7
1,002,369 + ABIE51_RS04620 0.74 -2.3
1,002,545 + ABIE51_RS04620 0.87 +2.0
1,002,751 + +0.0
1,002,805 + -0.0
1,002,805 + -1.2
1,002,805 + +1.8
1,002,806 - -0.7
1,002,806 - -0.7
1,004,423 - +0.3
1,004,423 - -0.3
1,004,486 + +1.1
1,004,486 + +0.7
1,004,487 - +0.8
1,004,918 + ABIE51_RS04635 0.63 +0.7
1,005,041 + ABIE51_RS04635 0.79 +0.3
1,005,041 + ABIE51_RS04635 0.79 +0.4
1,005,041 + ABIE51_RS04635 0.79 -0.2
1,005,041 + ABIE51_RS04635 0.79 +0.4
1,005,041 + ABIE51_RS04635 0.79 +1.0
1,005,256 + +0.4
1,005,256 + -0.3
1,005,256 + -0.0
1,005,256 + -0.3
1,005,257 - -0.2
1,005,295 - +1.0
1,005,332 + -0.2
1,005,333 - +0.1

Or see this region's nucleotide sequence