Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS07385 and ABIE51_RS07390 overlap by 29 nucleotides ABIE51_RS07390 and ABIE51_RS07395 are separated by 20 nucleotides ABIE51_RS07395 and ABIE51_RS07400 overlap by 23 nucleotides
ABIE51_RS07385: ABIE51_RS07385 - inositol-3-phosphate synthase, at 1,560,857 to 1,562,182
_RS07385
ABIE51_RS07390: ABIE51_RS07390 - glycosyl hydrolase, at 1,562,154 to 1,563,086
_RS07390
ABIE51_RS07395: ABIE51_RS07395 - glycosyltransferase family 9 protein, at 1,563,107 to 1,564,015
_RS07395
ABIE51_RS07400: ABIE51_RS07400 - Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain, at 1,563,993 to 1,565,270
_RS07400
Position (kb) 1563
1564
1565 Strain fitness (log2 ratio) -1
0
1
2 at 1562.154 kb on - strand at 1562.283 kb on + strand, within ABIE51_RS07390 at 1562.284 kb on - strand, within ABIE51_RS07390 at 1562.643 kb on + strand, within ABIE51_RS07390 at 1562.706 kb on + strand, within ABIE51_RS07390 at 1562.707 kb on - strand, within ABIE51_RS07390 at 1563.079 kb on - strand at 1563.284 kb on + strand, within ABIE51_RS07395 at 1563.320 kb on + strand, within ABIE51_RS07395 at 1563.321 kb on - strand, within ABIE51_RS07395 at 1563.591 kb on + strand, within ABIE51_RS07395 at 1563.591 kb on + strand, within ABIE51_RS07395 at 1563.633 kb on - strand, within ABIE51_RS07395 at 1564.090 kb on + strand at 1564.168 kb on + strand, within ABIE51_RS07400 at 1564.168 kb on + strand, within ABIE51_RS07400 at 1564.169 kb on - strand, within ABIE51_RS07400 at 1564.400 kb on + strand, within ABIE51_RS07400 at 1564.400 kb on + strand, within ABIE51_RS07400 at 1564.400 kb on + strand, within ABIE51_RS07400 at 1564.401 kb on - strand, within ABIE51_RS07400 at 1564.401 kb on - strand, within ABIE51_RS07400 at 1564.594 kb on + strand, within ABIE51_RS07400 at 1564.595 kb on - strand, within ABIE51_RS07400 at 1564.870 kb on + strand, within ABIE51_RS07400 at 1564.873 kb on + strand, within ABIE51_RS07400
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media remove 1,562,154 - +0.6 1,562,283 + ABIE51_RS07390 0.14 -0.9 1,562,284 - ABIE51_RS07390 0.14 -0.8 1,562,643 + ABIE51_RS07390 0.52 +2.5 1,562,706 + ABIE51_RS07390 0.59 +0.3 1,562,707 - ABIE51_RS07390 0.59 +0.1 1,563,079 - -0.0 1,563,284 + ABIE51_RS07395 0.19 +0.6 1,563,320 + ABIE51_RS07395 0.23 +0.2 1,563,321 - ABIE51_RS07395 0.24 +1.0 1,563,591 + ABIE51_RS07395 0.53 +0.7 1,563,591 + ABIE51_RS07395 0.53 +1.1 1,563,633 - ABIE51_RS07395 0.58 +1.1 1,564,090 + +0.1 1,564,168 + ABIE51_RS07400 0.14 -0.1 1,564,168 + ABIE51_RS07400 0.14 -0.6 1,564,169 - ABIE51_RS07400 0.14 +0.2 1,564,400 + ABIE51_RS07400 0.32 -0.4 1,564,400 + ABIE51_RS07400 0.32 +0.9 1,564,400 + ABIE51_RS07400 0.32 +0.8 1,564,401 - ABIE51_RS07400 0.32 +0.9 1,564,401 - ABIE51_RS07400 0.32 +0.3 1,564,594 + ABIE51_RS07400 0.47 +1.4 1,564,595 - ABIE51_RS07400 0.47 -0.6 1,564,870 + ABIE51_RS07400 0.69 -0.1 1,564,873 + ABIE51_RS07400 0.69 +0.1
Or see this region's nucleotide sequence