Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS03795 and ABIE51_RS03800 are separated by 335 nucleotides ABIE51_RS03800 and ABIE51_RS03805 are separated by 315 nucleotides
ABIE51_RS03795: ABIE51_RS03795 - porin, at 837,983 to 838,516
_RS03795
ABIE51_RS03800: ABIE51_RS03800 - hypothetical protein, at 838,852 to 839,127
_RS03800
ABIE51_RS03805: ABIE51_RS03805 - fumarate/nitrate reduction transcriptional regulator Fnr, at 839,443 to 840,207
_RS03805
Position (kb) 838
839
840 Strain fitness (log2 ratio) -2
-1
0
1
2 at 838.050 kb on + strand, within ABIE51_RS03795 at 838.051 kb on - strand, within ABIE51_RS03795 at 838.051 kb on - strand, within ABIE51_RS03795 at 838.086 kb on + strand, within ABIE51_RS03795 at 838.086 kb on + strand, within ABIE51_RS03795 at 838.104 kb on + strand, within ABIE51_RS03795 at 838.104 kb on + strand, within ABIE51_RS03795 at 838.105 kb on - strand, within ABIE51_RS03795 at 838.105 kb on - strand, within ABIE51_RS03795 at 838.105 kb on - strand, within ABIE51_RS03795 at 838.105 kb on - strand, within ABIE51_RS03795 at 838.195 kb on - strand, within ABIE51_RS03795 at 838.195 kb on - strand, within ABIE51_RS03795 at 838.243 kb on - strand, within ABIE51_RS03795 at 838.305 kb on + strand, within ABIE51_RS03795 at 838.306 kb on - strand, within ABIE51_RS03795 at 838.326 kb on + strand, within ABIE51_RS03795 at 838.327 kb on - strand, within ABIE51_RS03795 at 838.360 kb on - strand, within ABIE51_RS03795 at 838.360 kb on - strand, within ABIE51_RS03795 at 838.360 kb on - strand, within ABIE51_RS03795 at 838.380 kb on + strand, within ABIE51_RS03795 at 838.380 kb on + strand, within ABIE51_RS03795 at 838.381 kb on - strand, within ABIE51_RS03795 at 838.381 kb on - strand, within ABIE51_RS03795 at 838.398 kb on + strand, within ABIE51_RS03795 at 838.398 kb on + strand, within ABIE51_RS03795 at 838.398 kb on + strand, within ABIE51_RS03795 at 838.398 kb on + strand, within ABIE51_RS03795 at 838.398 kb on + strand, within ABIE51_RS03795 at 838.398 kb on + strand, within ABIE51_RS03795 at 838.398 kb on + strand, within ABIE51_RS03795 at 838.399 kb on - strand, within ABIE51_RS03795 at 838.399 kb on - strand, within ABIE51_RS03795 at 838.399 kb on - strand, within ABIE51_RS03795 at 838.399 kb on - strand, within ABIE51_RS03795 at 838.425 kb on + strand, within ABIE51_RS03795 at 838.426 kb on - strand, within ABIE51_RS03795 at 838.722 kb on + strand at 838.722 kb on + strand at 838.723 kb on - strand at 838.753 kb on + strand at 838.753 kb on + strand at 838.754 kb on - strand at 838.754 kb on - strand at 838.754 kb on - strand at 838.865 kb on + strand at 838.865 kb on + strand at 838.865 kb on + strand at 838.866 kb on - strand at 838.866 kb on - strand at 838.866 kb on - strand at 838.866 kb on - strand at 838.866 kb on - strand at 838.866 kb on - strand at 838.866 kb on - strand at 838.917 kb on - strand, within ABIE51_RS03800 at 839.130 kb on + strand at 839.130 kb on + strand at 839.130 kb on + strand at 839.130 kb on + strand at 839.130 kb on + strand at 839.130 kb on + strand at 839.131 kb on - strand at 839.131 kb on - strand at 839.131 kb on - strand at 839.131 kb on - strand at 839.131 kb on - strand at 839.199 kb on - strand at 839.317 kb on - strand at 839.415 kb on - strand at 839.415 kb on - strand at 839.629 kb on + strand, within ABIE51_RS03805 at 839.629 kb on + strand, within ABIE51_RS03805 at 839.629 kb on + strand, within ABIE51_RS03805 at 839.629 kb on + strand, within ABIE51_RS03805 at 839.629 kb on + strand, within ABIE51_RS03805 at 839.630 kb on - strand, within ABIE51_RS03805 at 839.630 kb on - strand, within ABIE51_RS03805
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media remove 838,050 + ABIE51_RS03795 0.13 +0.2 838,051 - ABIE51_RS03795 0.13 -0.3 838,051 - ABIE51_RS03795 0.13 -2.4 838,086 + ABIE51_RS03795 0.19 +0.2 838,086 + ABIE51_RS03795 0.19 -0.3 838,104 + ABIE51_RS03795 0.23 +0.0 838,104 + ABIE51_RS03795 0.23 +1.1 838,105 - ABIE51_RS03795 0.23 -0.4 838,105 - ABIE51_RS03795 0.23 -0.4 838,105 - ABIE51_RS03795 0.23 -0.2 838,105 - ABIE51_RS03795 0.23 +0.1 838,195 - ABIE51_RS03795 0.40 +0.5 838,195 - ABIE51_RS03795 0.40 +0.3 838,243 - ABIE51_RS03795 0.49 -0.3 838,305 + ABIE51_RS03795 0.60 -0.4 838,306 - ABIE51_RS03795 0.60 +0.0 838,326 + ABIE51_RS03795 0.64 -0.6 838,327 - ABIE51_RS03795 0.64 -0.9 838,360 - ABIE51_RS03795 0.71 -0.2 838,360 - ABIE51_RS03795 0.71 -0.1 838,360 - ABIE51_RS03795 0.71 -0.4 838,380 + ABIE51_RS03795 0.74 -0.4 838,380 + ABIE51_RS03795 0.74 -0.8 838,381 - ABIE51_RS03795 0.75 -0.1 838,381 - ABIE51_RS03795 0.75 -0.9 838,398 + ABIE51_RS03795 0.78 -0.6 838,398 + ABIE51_RS03795 0.78 +0.1 838,398 + ABIE51_RS03795 0.78 -2.5 838,398 + ABIE51_RS03795 0.78 -0.0 838,398 + ABIE51_RS03795 0.78 -0.3 838,398 + ABIE51_RS03795 0.78 -0.4 838,398 + ABIE51_RS03795 0.78 +1.0 838,399 - ABIE51_RS03795 0.78 -0.3 838,399 - ABIE51_RS03795 0.78 -0.1 838,399 - ABIE51_RS03795 0.78 -1.1 838,399 - ABIE51_RS03795 0.78 +1.9 838,425 + ABIE51_RS03795 0.83 -0.4 838,426 - ABIE51_RS03795 0.83 -0.6 838,722 + -0.3 838,722 + +0.1 838,723 - -0.7 838,753 + +0.1 838,753 + -0.3 838,754 - -0.0 838,754 - +0.7 838,754 - +0.3 838,865 + +0.5 838,865 + -0.1 838,865 + -0.6 838,866 - +1.7 838,866 - +0.5 838,866 - -0.0 838,866 - +1.0 838,866 - +0.1 838,866 - -0.9 838,866 - +0.4 838,917 - ABIE51_RS03800 0.24 -0.1 839,130 + -0.6 839,130 + -0.2 839,130 + -0.4 839,130 + +0.1 839,130 + -0.8 839,130 + -0.3 839,131 - -0.5 839,131 - +0.5 839,131 - -0.1 839,131 - +0.1 839,131 - -0.0 839,199 - -0.1 839,317 - +0.6 839,415 - -0.6 839,415 - +0.7 839,629 + ABIE51_RS03805 0.24 -0.1 839,629 + ABIE51_RS03805 0.24 -0.5 839,629 + ABIE51_RS03805 0.24 +0.1 839,629 + ABIE51_RS03805 0.24 -1.0 839,629 + ABIE51_RS03805 0.24 -0.4 839,630 - ABIE51_RS03805 0.24 -0.2 839,630 - ABIE51_RS03805 0.24 +0.3
Or see this region's nucleotide sequence