Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS02125

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS02120 and ABIE51_RS02125 are separated by 108 nucleotidesABIE51_RS02125 and ABIE51_RS02130 are separated by 168 nucleotidesABIE51_RS02130 and ABIE51_RS02135 are separated by 48 nucleotides ABIE51_RS02120: ABIE51_RS02120 - MFS transporter, at 474,108 to 475,433 _RS02120 ABIE51_RS02125: ABIE51_RS02125 - transaldolase, at 475,542 to 476,492 _RS02125 ABIE51_RS02130: ABIE51_RS02130 - NYN domain-containing protein, at 476,661 to 477,428 _RS02130 ABIE51_RS02135: ABIE51_RS02135 - protein-L-isoaspartate(D-aspartate) O-methyltransferase, at 477,477 to 478,250 _RS02135 Position (kb) 475 476 477Strain fitness (log2 ratio) -2 -1 0 1 2 3at 474.667 kb on + strand, within ABIE51_RS02120at 474.667 kb on + strand, within ABIE51_RS02120at 474.667 kb on + strand, within ABIE51_RS02120at 474.961 kb on + strand, within ABIE51_RS02120at 474.961 kb on + strand, within ABIE51_RS02120at 474.961 kb on + strand, within ABIE51_RS02120at 474.961 kb on + strand, within ABIE51_RS02120at 475.015 kb on + strand, within ABIE51_RS02120at 475.015 kb on + strand, within ABIE51_RS02120at 475.015 kb on + strand, within ABIE51_RS02120at 475.015 kb on + strand, within ABIE51_RS02120at 475.016 kb on - strand, within ABIE51_RS02120at 475.016 kb on - strand, within ABIE51_RS02120at 475.016 kb on - strand, within ABIE51_RS02120at 475.016 kb on - strand, within ABIE51_RS02120at 475.033 kb on + strand, within ABIE51_RS02120at 475.033 kb on + strand, within ABIE51_RS02120at 475.201 kb on + strand, within ABIE51_RS02120at 475.201 kb on + strand, within ABIE51_RS02120at 475.201 kb on + strand, within ABIE51_RS02120at 475.201 kb on + strand, within ABIE51_RS02120at 475.202 kb on - strand, within ABIE51_RS02120at 475.202 kb on - strand, within ABIE51_RS02120at 475.202 kb on - strand, within ABIE51_RS02120at 475.319 kb on - strandat 475.336 kb on + strandat 475.336 kb on + strandat 475.337 kb on - strandat 475.337 kb on - strandat 475.342 kb on + strandat 475.343 kb on - strandat 475.343 kb on - strandat 475.352 kb on - strandat 475.352 kb on - strandat 475.352 kb on - strandat 475.439 kb on + strandat 475.439 kb on + strandat 475.439 kb on + strandat 475.439 kb on + strandat 475.439 kb on + strandat 475.440 kb on - strandat 475.440 kb on - strandat 475.440 kb on - strandat 475.440 kb on - strandat 475.543 kb on + strandat 475.544 kb on - strandat 475.544 kb on - strandat 475.841 kb on + strand, within ABIE51_RS02125at 475.841 kb on + strand, within ABIE51_RS02125at 475.841 kb on + strand, within ABIE51_RS02125at 475.842 kb on - strand, within ABIE51_RS02125at 475.861 kb on + strand, within ABIE51_RS02125at 475.861 kb on + strand, within ABIE51_RS02125at 475.861 kb on + strand, within ABIE51_RS02125at 475.861 kb on + strand, within ABIE51_RS02125at 475.861 kb on + strand, within ABIE51_RS02125at 475.862 kb on - strand, within ABIE51_RS02125at 475.862 kb on - strand, within ABIE51_RS02125at 475.862 kb on - strand, within ABIE51_RS02125at 475.862 kb on - strand, within ABIE51_RS02125at 475.862 kb on - strand, within ABIE51_RS02125at 476.143 kb on + strand, within ABIE51_RS02125at 476.143 kb on + strand, within ABIE51_RS02125at 476.144 kb on - strand, within ABIE51_RS02125at 476.144 kb on - strand, within ABIE51_RS02125at 476.144 kb on - strand, within ABIE51_RS02125at 476.144 kb on - strand, within ABIE51_RS02125at 476.144 kb on - strand, within ABIE51_RS02125at 476.309 kb on + strand, within ABIE51_RS02125at 476.462 kb on - strandat 476.548 kb on + strandat 476.620 kb on + strandat 476.621 kb on - strandat 476.781 kb on + strand, within ABIE51_RS02130at 476.835 kb on + strand, within ABIE51_RS02130at 476.865 kb on + strand, within ABIE51_RS02130at 476.925 kb on + strand, within ABIE51_RS02130at 476.925 kb on + strand, within ABIE51_RS02130at 476.926 kb on - strand, within ABIE51_RS02130at 476.926 kb on - strand, within ABIE51_RS02130at 476.926 kb on - strand, within ABIE51_RS02130at 477.018 kb on + strand, within ABIE51_RS02130at 477.018 kb on + strand, within ABIE51_RS02130at 477.019 kb on - strand, within ABIE51_RS02130at 477.079 kb on - strand, within ABIE51_RS02130at 477.079 kb on - strand, within ABIE51_RS02130at 477.079 kb on - strand, within ABIE51_RS02130at 477.283 kb on - strand, within ABIE51_RS02130at 477.283 kb on - strand, within ABIE51_RS02130at 477.283 kb on - strand, within ABIE51_RS02130at 477.449 kb on + strandat 477.465 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
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474,667 + ABIE51_RS02120 0.42 -0.2
474,667 + ABIE51_RS02120 0.42 -0.7
474,667 + ABIE51_RS02120 0.42 -0.8
474,961 + ABIE51_RS02120 0.64 +0.1
474,961 + ABIE51_RS02120 0.64 -0.1
474,961 + ABIE51_RS02120 0.64 +0.8
474,961 + ABIE51_RS02120 0.64 +0.7
475,015 + ABIE51_RS02120 0.68 +0.3
475,015 + ABIE51_RS02120 0.68 -0.4
475,015 + ABIE51_RS02120 0.68 -0.4
475,015 + ABIE51_RS02120 0.68 -0.3
475,016 - ABIE51_RS02120 0.68 +0.3
475,016 - ABIE51_RS02120 0.68 +0.2
475,016 - ABIE51_RS02120 0.68 +0.7
475,016 - ABIE51_RS02120 0.68 +0.2
475,033 + ABIE51_RS02120 0.70 +0.5
475,033 + ABIE51_RS02120 0.70 +0.2
475,201 + ABIE51_RS02120 0.82 -0.1
475,201 + ABIE51_RS02120 0.82 -0.6
475,201 + ABIE51_RS02120 0.82 -0.1
475,201 + ABIE51_RS02120 0.82 +0.8
475,202 - ABIE51_RS02120 0.83 -0.7
475,202 - ABIE51_RS02120 0.83 -0.6
475,202 - ABIE51_RS02120 0.83 +0.4
475,319 - -0.6
475,336 + +0.4
475,336 + +0.4
475,337 - +1.5
475,337 - -0.5
475,342 + -0.3
475,343 - -0.8
475,343 - -0.5
475,352 - -0.1
475,352 - +0.6
475,352 - -0.1
475,439 + +0.4
475,439 + -0.4
475,439 + +1.2
475,439 + +1.2
475,439 + -0.4
475,440 - +1.1
475,440 - +0.8
475,440 - +0.0
475,440 - -0.4
475,543 + +1.2
475,544 - +0.1
475,544 - -0.1
475,841 + ABIE51_RS02125 0.31 -0.6
475,841 + ABIE51_RS02125 0.31 +0.7
475,841 + ABIE51_RS02125 0.31 -0.5
475,842 - ABIE51_RS02125 0.32 -0.2
475,861 + ABIE51_RS02125 0.34 +0.1
475,861 + ABIE51_RS02125 0.34 -0.2
475,861 + ABIE51_RS02125 0.34 -0.1
475,861 + ABIE51_RS02125 0.34 +0.3
475,861 + ABIE51_RS02125 0.34 +0.0
475,862 - ABIE51_RS02125 0.34 +1.0
475,862 - ABIE51_RS02125 0.34 -1.5
475,862 - ABIE51_RS02125 0.34 -1.1
475,862 - ABIE51_RS02125 0.34 -0.3
475,862 - ABIE51_RS02125 0.34 -0.3
476,143 + ABIE51_RS02125 0.63 +0.9
476,143 + ABIE51_RS02125 0.63 +0.4
476,144 - ABIE51_RS02125 0.63 -0.2
476,144 - ABIE51_RS02125 0.63 +3.5
476,144 - ABIE51_RS02125 0.63 -1.6
476,144 - ABIE51_RS02125 0.63 -0.4
476,144 - ABIE51_RS02125 0.63 -0.4
476,309 + ABIE51_RS02125 0.81 -0.7
476,462 - -0.3
476,548 + -0.0
476,620 + +0.6
476,621 - -0.3
476,781 + ABIE51_RS02130 0.16 -0.0
476,835 + ABIE51_RS02130 0.23 -1.0
476,865 + ABIE51_RS02130 0.27 +0.6
476,925 + ABIE51_RS02130 0.34 +0.4
476,925 + ABIE51_RS02130 0.34 +0.0
476,926 - ABIE51_RS02130 0.35 -0.2
476,926 - ABIE51_RS02130 0.35 -0.8
476,926 - ABIE51_RS02130 0.35 +0.3
477,018 + ABIE51_RS02130 0.46 -0.1
477,018 + ABIE51_RS02130 0.46 -0.0
477,019 - ABIE51_RS02130 0.47 +0.4
477,079 - ABIE51_RS02130 0.54 -0.4
477,079 - ABIE51_RS02130 0.54 -1.8
477,079 - ABIE51_RS02130 0.54 +0.0
477,283 - ABIE51_RS02130 0.81 -0.5
477,283 - ABIE51_RS02130 0.81 -0.6
477,283 - ABIE51_RS02130 0.81 +0.7
477,449 + -0.1
477,465 - -0.7

Or see this region's nucleotide sequence